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scnpilot_p_inoc_scaffold_42_curated

Search features with annotation key words

Displaying items 1-30 of 295 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_42_curated_1
unknown

Not on your lists

comp(540..1103)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003788B73
scnpilot_p_inoc_scaffold_42_curated_2
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1105..2304)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00035CA0D0
Uncharacterized protein {ECO:0000313|EMBL:KGO80800.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
hypothetical protein
scnpilot_p_inoc_scaffold_42_curated_3
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2607..3791)
DNA (1185bp) protein (395aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003772E26
signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AEE52877.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
scnpilot_p_inoc_scaffold_42_curated_4
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3736..4446)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000373E6E5
Uncharacterized protein {ECO:0000313|EMBL:AHJ95787.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
LytTR family transcriptional regulator
scnpilot_p_inoc_scaffold_42_curated_5
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4614..7682)
DNA (3069bp) protein (1023aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003706A5F
Uncharacterized protein {ECO:0000313|EMBL:AHJ95799.1}; TaxID=1227739 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
Subtilin biosynthesis protein spaB
scnpilot_p_inoc_scaffold_42_curated_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8076..9143
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036C25BB
phage/plasmid-like protein
Phage/plasmid-related protein TIGR03299 {ECO:0000313|EMBL:ACT92201.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_7
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9505..9975
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003749018
DNA repair protein RadC
DNA repair protein {ECO:0000313|EMBL:KFF03279.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
scnpilot_p_inoc_scaffold_42_curated_8
unknown

Not on your lists

comp(10054..10338)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036B4D01
scnpilot_p_inoc_scaffold_42_curated_9
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10702..11091
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003644A30
Mobilization protein {ECO:0000313|EMBL:KFF09832.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
scnpilot_p_inoc_scaffold_42_curated_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11079..12344
DNA (1266bp) protein (422aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036867EC
Relaxase/mobilization nuclease family protein
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:AEV97461.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_42_curated_11
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12370..14361
DNA (1992bp) protein (664aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036A251A
type IV secretory pathway VirD4 components-like protein
Type IV secretory pathway VirD4 components-like protein {ECO:0000313|EMBL:ADF53737.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
scnpilot_p_inoc_scaffold_42_curated_12
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15029..17086)
DNA (2058bp) protein (686aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EKY3_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51209.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_p_inoc_scaffold_42_curated_13
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17339..18385
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VTE2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK57043.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
scnpilot_p_inoc_scaffold_42_curated_14
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

18523..19113
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D43F
hypothetical protein
Tax=GWA2_Bdellovibrionales_49_15_curated
scnpilot_p_inoc_scaffold_42_curated_15
Paenibacillus sp. FSL R5-808, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19703..20305)
DNA (603bp) protein (201aa)
Uncharacterized protein {ECO:0000313|EMBL:ETT33747.1}; TaxID=1227076 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-808.;"
scnpilot_p_inoc_scaffold_42_curated_16
unknown

Not on your lists

20446..20754
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_42_curated_17
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20888..21475)
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Anaerostipes RepID=R6QHH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC36063.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
hypothetical protein
scnpilot_p_inoc_scaffold_42_curated_18
unknown

Not on your lists

22177..22332
DNA (156bp) protein (52aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_42_curated_19
unknown

Not on your lists

comp(22375..22839)
DNA (465bp) protein (155aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_42_curated_20
unknown

Not on your lists

23251..23448
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_42_curated_21
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23454..25073
DNA (1620bp) protein (540aa)
Resolvase domain n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RVJ3_LEAB4
resolvase domain
Resolvase domain {ECO:0000313|EMBL:ADQ17057.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_p_inoc_scaffold_42_curated_22
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25184..26428)
DNA (1245bp) protein (415aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWP7_DYAFD
hypothetical protein; K02004 putative ABC transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96797.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_23
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26598..27884
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000361D0F1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96798.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

28073..29317
DNA (1245bp) protein (415aa)
ABC transporter permease n=1 Tax=Dyadobacter beijingensis RepID=UPI000376DE5C
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACT96799.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_25
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29314..30765
DNA (1452bp) protein (484aa)
Outer membrane efflux protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWQ0_DYAFD
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ACT96800.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_26
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31082..31744
DNA (663bp) protein (221aa)
ABC transporter n=1 Tax=Dyadobacter beijingensis RepID=UPI000382429A
ABC transporter; K02003 putative ABC transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACT96801.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_27
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31971..33215
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003699559
hypothetical protein; K02004 putative ABC transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96802.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_28
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

33324..34490
DNA (1167bp) protein (389aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWQ3_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96803.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_29
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

34920..36293
DNA (1374bp) protein (458aa)
chemotaxis protein CheY n=1 Tax=Dyadobacter beijingensis RepID=UPI00036816BC
two component sigma-54 specific Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ACT96804.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_30
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

36290..37576
DNA (1287bp) protein (429aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Histidine kinase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWQ5_DYAFD
histidine kinase
Displaying items 1-30 of 295 in total

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