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scnpilot_p_inoc_scaffold_236_curated_5

Organism: scnpilot_dereplicated_Flavobacteriia_1

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 4669..5274

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHB1_FLUTR similarity UNIREF
DB: UNIREF100
  • Identity: 74.3
  • Coverage: 202.0
  • Bit_score: 299
  • Evalue 3.50e-78
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 74.3
  • Coverage: 202.0
  • Bit_score: 299
  • Evalue 1.10e-78
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA42666.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.3
  • Coverage: 202.0
  • Bit_score: 299
  • Evalue 4.90e-78

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Taxonomy

Fluviicola taffensis → Fluviicola → Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 606
ATGGAATTGACGAAAAATTTGTCTGATAAGGCAAAGCGGGATTATGAATTGGTTCAGAATGCACTGATAGGAAATCAGGGGGCGTATTCTCAATTGATGGATTTTTACCGTGAATCTGTTTACCATACAATTATTAAGATGGTAAAAAATACAGATGATGCGGAAGATTTGACAATTGAAGCCTTTGGAAAAGCTTTTAGTCGCCTGGATCAATATTCCCCTAACTTTGCATTCAGTACATGGTTGTTTAAGATAGCAACTAATAATTGTATTGATTTCATTCGGAAAAAGCGTCTGAAAGTAACTTCAATGGATACCGGCTATACCAGAGATGACGGCGAGGTTATTTATATTGATGCCAGATCTTCAACAATGACTCCGGAAGAAGAAATAATTAATGACCAGAAAGTGAAATTAATGAGAGATTTGGTAACGAGATTGAAGCCGAGATACAGGGAGCTTGTTGAATTGCGGTATTTTGAGGAATTGAGTTACGAGGAAATTGCTGAAACGCTTAATCTTCCATTGGGAACTGTAAAAGCGCAGTTGTTCAGGGCGAGAGATTTTCTTGCAACAATGATTGAGAAAACAAAAGAAACTATATAA
PROTEIN sequence
Length: 202
MELTKNLSDKAKRDYELVQNALIGNQGAYSQLMDFYRESVYHTIIKMVKNTDDAEDLTIEAFGKAFSRLDQYSPNFAFSTWLFKIATNNCIDFIRKKRLKVTSMDTGYTRDDGEVIYIDARSSTMTPEEEIINDQKVKLMRDLVTRLKPRYRELVELRYFEELSYEEIAETLNLPLGTVKAQLFRARDFLATMIEKTKETI*