ggKbase home page

scnpilot_p_inoc_scaffold_236_curated

Search features with annotation key words

Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_236_curated_1
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(460..1233)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHA7_FLUTR
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_2
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1233..2333)
DNA (1101bp) protein (367aa)
Permease YjgP/YjgQ family protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHA8_FLUTR
permease YjgP/YjgQ family protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_3
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2333..3463)
DNA (1131bp) protein (377aa)
tRNA-guanine transglycosylase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHA9_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_4
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

3542..4678
DNA (1137bp) protein (379aa)
Glycosyl transferase family 2 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHB0_FLUTR
family 2 glycosyl transferase
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
scnpilot_p_inoc_scaffold_236_curated_5
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4669..5274
DNA (606bp) protein (202aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IHB1_FLUTR
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEA42666.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_6
Kordia algicida, Kordia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5334..6200)
DNA (867bp) protein (289aa)
Integrase, catalytic region n=1 Tax=Kordia algicida OT-1 RepID=A9DKX3_9FLAO
Integrase, catalytic region {ECO:0000313|EMBL:EDP98422.1}; TaxID=391587 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Kordia.;" source="Kordia algicida OT-1.;"
transposase
scnpilot_p_inoc_scaffold_236_curated_7
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6200..6634)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R2C1_OWEHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV32911.1}; TaxID=926562 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Owenweeksia.;" source="Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL; B-23963).;"
scnpilot_p_inoc_scaffold_236_curated_8
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6742..7329)
DNA (588bp) protein (196aa)
50S ribosomal protein L25 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBD3_FLUTR
50S ribosomal protein L25; K02897 large subunit ribosomal protein L25
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_9
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7353..8312)
DNA (960bp) protein (320aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:AEA43218.1}; EC=2.7.6.1 {ECO:0000313|EMBL:AEA43218.1};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IBD2_FLUTR
scnpilot_p_inoc_scaffold_236_curated_10
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8441..9778
DNA (1338bp) protein (446aa)
Saccharopine dehydrogenase (EC:1.5.1.10)
Saccharopine dehydrogenase (NADP(+), L-glutamate-forming) n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ICS7_FLUTR
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_11
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


9900..10280
DNA (381bp) protein (127aa)
30S ribosomal protein S12 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIT0_FLUTR
30S ribosomal protein S12P; K02950 small subunit ribosomal protein S12
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_12
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


10301..10771
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS9_FLUTR
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_13
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10781..12880
DNA (2100bp) protein (700aa)
Elongation factor G n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS8_FLUTR
translation elongation factor 2 (EF-2/EF-G); K02355 elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_14
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


12892..13197
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS7_FLUTR
30S ribosomal protein S10P; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_15
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


13221..13838
DNA (618bp) protein (206aa)
50S ribosomal protein L3 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS6_FLUTR
50S ribosomal protein L3P; K02906 large subunit ribosomal protein L3
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_16
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists


13840..14466
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS5_FLUTR
50S ribosomal protein L4P; K02926 large subunit ribosomal protein L4
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
scnpilot_p_inoc_scaffold_236_curated_17
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists


14474..14770
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS4_FLUTR
50S ribosomal protein L23P; K02892 large subunit ribosomal protein L23
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
scnpilot_p_inoc_scaffold_236_curated_18
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists


14780..15601
DNA (822bp) protein (274aa)
50S ribosomal protein L2 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS3_FLUTR
50S ribosomal protein L2P; K02886 large subunit ribosomal protein L2
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
scnpilot_p_inoc_scaffold_236_curated_19
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


15609..15887
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS2_FLUTR
30S ribosomal protein S19P; K02965 small subunit ribosomal protein S19
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_20
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


15901..16296
DNA (396bp) protein (132aa)
50S ribosomal protein L22 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS1_FLUTR
50S ribosomal protein L22P; K02890 large subunit ribosomal protein L22
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_21
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists


16305..17030
DNA (726bp) protein (242aa)
30S ribosomal protein S3 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIS0_FLUTR
30S ribosomal protein S3P; K02982 small subunit ribosomal protein S3
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
scnpilot_p_inoc_scaffold_236_curated_22
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


17055..17483
DNA (429bp) protein (143aa)
50S ribosomal protein L16 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR9_FLUTR
50S ribosomal protein L16P; K02878 large subunit ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_23
Ancylostoma ceylanicum, Ancylostoma, Rhabditida, Chromadorea, Nematoda, Metazoa

Not on your lists


17492..17686
DNA (195bp) protein (65aa)
Ribosomal protein L29 {ECO:0000313|EMBL:EPB65713.1}; TaxID=53326 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma.;" source="Ancylostoma ceylanicum.;"
50S ribosomal protein L29P; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 id=4226195 bin=GWA2_Flavobacterium_35_26 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
scnpilot_p_inoc_scaffold_236_curated_24
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


17689..17946
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR7_FLUTR
30S ribosomal protein S17P; K02961 small subunit ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_25
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


17956..18324
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR6_FLUTR
50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_26
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


18337..18654
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR5_FLUTR
50S ribosomal protein L24P; K02895 large subunit ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_27
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


18654..19205
DNA (552bp) protein (184aa)
50S ribosomal protein L5 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR4_FLUTR
50S ribosomal protein L5P; K02931 large subunit ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
scnpilot_p_inoc_scaffold_236_curated_28
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists


19213..19527
DNA (315bp) protein (105aa)
30S ribosomal protein S14 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR3_FLUTR
30S ribosomal protein S14P; K02954 small subunit ribosomal protein S14
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
scnpilot_p_inoc_scaffold_236_curated_29
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


19543..19941
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR2_FLUTR
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_236_curated_30
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


19963..20520
DNA (558bp) protein (186aa)
50S ribosomal protein L6 n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IIR1_FLUTR
50S ribosomal protein L6P; K02933 large subunit ribosomal protein L6
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
Displaying items 1-30 of 141 in total

View Taxonomy