ggKbase home page

scnpilot_p_inoc_scaffold_25_curated_343

Organism: scnpilot_dereplicated_Flavobacteriia_1

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 394570..395145

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2I9Q2_FLUTR similarity UNIREF
DB: UNIREF100
  • Identity: 45.7
  • Coverage: 184.0
  • Bit_score: 179
  • Evalue 3.80e-42
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 184.0
  • Bit_score: 179
  • Evalue 1.20e-42
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 48.4
  • Coverage: 186.0
  • Bit_score: 188
  • Evalue 1.20e-44

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Fluviicola_43_260 → Flavobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 576
ATGGCAATTGACCTCAGCATATTACAGCGGTGTATCGATAATGATCAGAGAGCATTAAAACAGCTTTACGAGTACAGCTTTTGCAGACTGATGCCTCTTTGTGTGCGTTATCATAACAATCAGGAAGACGCGCGTGCAAGCCTGAATATCGCTTTTATGAAGATTGTACAGAACCTGCCATCCATGGAGTTTGAGAAATTTAATTATGAAGCGTGGTCAAAGAGAATTATGACAAATACACTGATTGATGAGTACCGTAAGCAGAAGCTGAGAAATGAGCATTATATAAAAAAAGAGACAGAGCGCGAGCTGGACAACATTTCGGAAGCGGTAACGAATGAAGGAATGGAGAATCTGAACCATGAATTTCTTATGAAGCTGCTTCAGCAGCTTCCTGAGACAACCCGCATGGTTTTTAATTTACATGTTGTTGAAGGATATGGACATAAAGAAATTTCTGAAATGCTTTCCATTCCTGAAGGAACATCGAAGTGGCATGTATCCAATGCCCGGAAATTAATGAAGGAATTATTGGAAAAAGTATTAAATAAAACGACATTAGATGAATTTATCTGA
PROTEIN sequence
Length: 192
MAIDLSILQRCIDNDQRALKQLYEYSFCRLMPLCVRYHNNQEDARASLNIAFMKIVQNLPSMEFEKFNYEAWSKRIMTNTLIDEYRKQKLRNEHYIKKETERELDNISEAVTNEGMENLNHEFLMKLLQQLPETTRMVFNLHVVEGYGHKEISEMLSIPEGTSKWHVSNARKLMKELLEKVLNKTTLDEFI*