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scnpilot_p_inoc_scaffold_2377_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2377_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..811
DNA (810bp) protein (270aa)
Nucleotidyl transferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG31_9BURK
Nucleotidyl transferase {ECO:0000313|EMBL:EIK88171.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
scnpilot_p_inoc_scaffold_2377_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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884..2281
DNA (1398bp) protein (466aa)
Peptidase m24 {ECO:0000313|EMBL:EIK88172.1}; EC=3.4.11.- {ECO:0000313|EMBL:EIK88172.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
pepP; Xaa-Pro aminopeptidase; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9]
Peptidase m24 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG32_9BURK
scnpilot_p_inoc_scaffold_2377_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2287..2595)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG33_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK88173.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2377_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2724..3200
DNA (477bp) protein (159aa)
Bacterioferritin n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG34_9BURK
Bacterioferritin {ECO:0000256|RuleBase:RU000623}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
bacterioferritin; K03594 bacterioferritin
scnpilot_p_inoc_scaffold_2377_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3303..3527
DNA (225bp) protein (75aa)
BFD/(2Fe-2S)-binding domain-containing protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG35_9BURK
BFD/(2Fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:EIK88175.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
bfd domain-containing protein (2fe-2S)-binding domain-containing protein; K02192 bacterioferritin-associated ferredoxin
scnpilot_p_inoc_scaffold_2377_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3681..6008
DNA (2328bp) protein (776aa)
Malic enzyme {ECO:0000313|EMBL:EIK88176.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EIK88176.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
malic enzyme (EC:1.1.1.40 2.3.1.8); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
Malic enzyme n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG36_9BURK
scnpilot_p_inoc_scaffold_2377_curated_7
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6334..6615
DNA (282bp) protein (94aa)
guanine-specific ribonuclease N1 and T1; K01167 ribonuclease T1 [EC:3.1.27.3] id=5081360 bin=GWF1_Burkholderiales_GWF1_66_17 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
guanine-specific ribonuclease N1 and T1; K01167 ribonuclease T1 [EC:3.1.27.3]
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_2377_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6669..7211
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG38_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK88178.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2377_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7331..8092)
DNA (762bp) protein (254aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG39_9BURK
scnpilot_p_inoc_scaffold_2377_curated_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8089..9459)
DNA (1371bp) protein (457aa)
survival protein surA; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
Chaperone SurA n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG40_9BURK
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Flags: Precursor;; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2377_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9452..11785)
DNA (2334bp) protein (778aa)
LPS-assembly protein LptD n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG41_9BURK
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
organic solvent tolerance protein; K04744 LPS-assembly protein
scnpilot_p_inoc_scaffold_2377_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11960..12931
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MG42_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK88182.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K07102
Displaying 12 items

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