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scnpilot_p_inoc_scaffold_2410_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2410_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..432
-----------------
DNA (432bp)
protein (144aa)
integral membrane sensor hybrid histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTB0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92450.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2410_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

494..949
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTB0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92450.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2410_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1010..2392)
-----------------
DNA (1383bp)
protein (461aa)
Response regulator NtrC n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTB3_9BURK
Response regulator NtrC {ECO:0000313|EMBL:EIK92453.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Fis family sigma-54 specific transcriptional regulator
scnpilot_p_inoc_scaffold_2410_curated_4
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2601..3455)
-----------------
DNA (855bp)
protein (285aa)
Putative membrane protein id=1268637 bin=GWE1_Burkholderiales_65_30 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
YihY family protein
Tax=CG_Rhodof_02
scnpilot_p_inoc_scaffold_2410_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3464..6250)
-----------------
DNA (2787bp)
protein (929aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTB5_9BURK
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EIK92455.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hybrid histidine kinase
scnpilot_p_inoc_scaffold_2410_curated_6
unknown

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6355..6588
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2410_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6736..6909)
-----------------
DNA (174bp)
protein (58aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTB8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK92458.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2410_curated_8
unknown

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comp(7046..7222)
-----------------
DNA (177bp)
protein (59aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2410_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7331..7825
-----------------
DNA (495bp)
protein (165aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D8059
signal transduction protein with CBS domains
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ACS18647.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_p_inoc_scaffold_2410_curated_10
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7820..8389)
-----------------
DNA (570bp)
protein (190aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TT21_ACIAC
hypothetical protein; K08995 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ABM34109.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_2410_curated_11
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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8531..8929
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5NXY0_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI10084.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_p_inoc_scaffold_2410_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9099..9464
-----------------
DNA (366bp)
protein (122aa)
ATP-dependent Clp protease adapter protein ClpS n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTC0_9BURK
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ATP-dependent clp protease adaptor protein clps; K06891 ATP-dependent Clp protease adaptor protein ClpS
scnpilot_p_inoc_scaffold_2410_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9542..11878
-----------------
DNA (2337bp)
protein (779aa)
ATP-dependent Clp protease ATP-binding protein ClpA {ECO:0000313|EMBL:EIK92461.1}; EC=3.6.1.15 {ECO:0000313|EMBL:EIK92461.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ATP-dependent Clp protease ATP-binding protein ClpA n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTC1_9BURK
ATPase; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
scnpilot_p_inoc_scaffold_2410_curated_14
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11952..13160)
-----------------
DNA (1209bp)
protein (403aa)
general substrate transporters id=5080868 bin=GWF1_Burkholderiales_GWF1_66_17 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
major facilitator superfamily transporter
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_2410_curated_15
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13212..14753)
-----------------
DNA (1542bp)
protein (514aa)
Putative hydrolase {ECO:0000313|EMBL:EIK92471.1}; EC=3.6.1.15 {ECO:0000313|EMBL:EIK92471.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Putative hydrolase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTD1_9BURK
hypothetical protein; K06915
scnpilot_p_inoc_scaffold_2410_curated_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14861..15586
-----------------
DNA (726bp)
protein (242aa)
Probable transcriptional regulatory protein Q5W_0604 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTD2_9BURK
Probable transcriptional regulatory protein Q5W_0604 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2410_curated_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15583..16857
-----------------
DNA (1275bp)
protein (425aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
phosphoribosylamine/glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTD3_9BURK
scnpilot_p_inoc_scaffold_2410_curated_18
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16854..17501
-----------------
DNA (648bp)
protein (216aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y672_9BURK
phospholipid/glycerol acyltransferase
Tax=GWA2_Curvibacter_64_110_curated
scnpilot_p_inoc_scaffold_2410_curated_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17504..18421
-----------------
DNA (918bp)
protein (306aa)
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coproporphyrinogenase {ECO:0000256|HAMAP-Rule:MF_00333};; EC=1.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00333};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
coproporphyrinogen III oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTD4_9BURK
scnpilot_p_inoc_scaffold_2410_curated_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18421..19068
-----------------
DNA (648bp)
protein (216aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTD5_9BURK
scnpilot_p_inoc_scaffold_2410_curated_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19065..19166
-----------------
DNA (102bp)
protein (34aa)
Ribosomal silencing factor RsfS n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTD6_9BURK
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Displaying 21 items

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