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scnpilot_p_inoc_scaffold_4033_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4033_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..581)
DNA (579bp) protein (193aa)
NUDIX hydrolase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNB2_9BURK
NUDIX hydrolase {ECO:0000313|EMBL:EIK90702.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
NUDIX hydrolase
scnpilot_p_inoc_scaffold_4033_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(629..985)
DNA (357bp) protein (119aa)
50S ribosomal protein L19 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNB1_9BURK
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
scnpilot_p_inoc_scaffold_4033_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1140..1913)
DNA (774bp) protein (258aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNB0_9BURK
trmD; tRNA (guanine-N(1)-)-methyltransferase
scnpilot_p_inoc_scaffold_4033_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1929..2516)
DNA (588bp) protein (196aa)
Ribosome maturation factor RimM n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA9_9BURK
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
scnpilot_p_inoc_scaffold_4033_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2524..2781)
DNA (258bp) protein (86aa)
30S ribosomal protein S16 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA8_9BURK
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
scnpilot_p_inoc_scaffold_4033_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2976..3503
DNA (528bp) protein (176aa)
antibiotic resistance protein; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
N-acetyltransferase GCN5 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA7_9BURK
N-acetyltransferase GCN5 {ECO:0000313|EMBL:EIK90697.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_4033_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3506..3958
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90696.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4033_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3969..4937)
DNA (969bp) protein (323aa)
Auxin efflux carrier n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA5_9BURK
Auxin efflux carrier {ECO:0000313|EMBL:EIK90695.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
auxin efflux carrier; K07088
scnpilot_p_inoc_scaffold_4033_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4998..5243)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90693.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4033_curated_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5247..5765)
DNA (519bp) protein (173aa)
Fur family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MNA0_9BURK
Fur family transcriptional regulator {ECO:0000313|EMBL:EIK90690.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Fur family transcriptional regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator
scnpilot_p_inoc_scaffold_4033_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5807..6754
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN99_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90689.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative amino-acid metabolite efflux pump; K15268 O-acetylserine/cysteine efflux transporter
scnpilot_p_inoc_scaffold_4033_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6771..7727
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MPC2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91062.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4033_curated_13
Brevibacillus sp. BC25, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7858..8217
DNA (360bp) protein (120aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Brevibacillus sp. BC25 RepID=J2PPG5_9BACL
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EJL29512.1}; TaxID=1144308 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. BC25.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4033_curated_14
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

8240..9562
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00037597B6
hypothetical protein
Tax=RBG_16_Chloroflexi_68_14_curated
scnpilot_p_inoc_scaffold_4033_curated_15
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9592..10374)
DNA (783bp) protein (261aa)
D-beta-hydroxybutyrate dehydrogenase (BDH); K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
Candidate D-beta-hydroxybutyrate dehydrogenase (BDH) n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVR0_RAMTT
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KIL03356.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
scnpilot_p_inoc_scaffold_4033_curated_16
bacterium YEK0313, Bacteria

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comp(10371..12563)
DNA (2193bp) protein (731aa)
Putative Acetyl-CoA synthetase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IV51_BORPD
Succinyl-CoA synthetase subunit beta {ECO:0000313|EMBL:CEJ09735.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Acetyl-CoA synthetase
scnpilot_p_inoc_scaffold_4033_curated_17
Desulfarculus sp. SPR, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12574..13593)
DNA (1020bp) protein (340aa)
NAD-binding 3-hydroxyacyl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
hypothetical protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B381BD
Contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIX11137.1}; TaxID=1429043 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus sp. SPR.;"
scnpilot_p_inoc_scaffold_4033_curated_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13595..13990)
DNA (396bp) protein (132aa)
UPI0003D3C87C related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3C87C
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:GAD23757.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4033_curated_19
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14001..14963)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003767E32
bug56; hypothetical protein
Tax=GWA2_Curvibacter_64_110_curated
scnpilot_p_inoc_scaffold_4033_curated_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15153..15956)
DNA (804bp) protein (268aa)
IclR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIV1_9BURK
IclR family transcriptional regulator {ECO:0000313|EMBL:EIK89141.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
IclR family transcriptional regulator
scnpilot_p_inoc_scaffold_4033_curated_21
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16063..16980
DNA (918bp) protein (306aa)
NADPH:quinone reductase, zeta-crystallin-like oxidoreductase protein n=1 Tax=Ralstonia solanacearum (strain Po82) RepID=F6G330_RALS8
NADPH:quinone reductase, zeta-crystallin-like oxidoreductase protein
NADPH:quinone reductase, zeta-crystallin-like oxidoreductase protein {ECO:0000313|EMBL:AEG69463.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain Po82).;"
scnpilot_p_inoc_scaffold_4033_curated_22
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16989..17915
DNA (927bp) protein (309aa)
LysR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S3P3_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:KDP85481.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
LysR family transcriptional regulator; K13928 LysR family transcriptional regulator, malonate utilization transcriptional regulator
scnpilot_p_inoc_scaffold_4033_curated_23
Ralstonia mannitolilytica, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17937..18713)
DNA (777bp) protein (259aa)
fpr; ferredoxin--nadp reductase (EC:1.18.1.2); K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2]
Ferredoxin--NADP reductase n=1 Tax=Ralstonia sp. AU12-08 RepID=S9THQ3_9RALS
Ferredoxin-NADP reductase {ECO:0000313|EMBL:AJW46303.1}; TaxID=105219 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia mannitolilytica.;"
scnpilot_p_inoc_scaffold_4033_curated_24
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18727..19059)
DNA (333bp) protein (111aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M9A5_METRJ
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ACB28080.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
scnpilot_p_inoc_scaffold_4033_curated_25
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19183..19719)
DNA (537bp) protein (179aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
msrA; peptide methionine sulfoxide reductase; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN98_9BURK
scnpilot_p_inoc_scaffold_4033_curated_26
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19816..20709)
DNA (894bp) protein (298aa)
Transcriptional regulator, LysR family id=1287129 bin=GWE1_Burkholderiales_65_30 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
transcriptional regulator, LysR family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
scnpilot_p_inoc_scaffold_4033_curated_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20812..21693
DNA (882bp) protein (294aa)
Methyltransferase type 11 n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTJ3_POLNA
type 11 methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
scnpilot_p_inoc_scaffold_4033_curated_28
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21690..22586)
DNA (897bp) protein (299aa)
LysR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN97_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:EIK90687.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_4033_curated_29
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22700..23893
DNA (1194bp) protein (398aa)
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:EIK90686.1}; EC=1.3.8.6 {ECO:0000313|EMBL:EIK90686.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
acyl-CoA dehydrogenase domain-containing protein; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Glutaryl-CoA dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MN96_9BURK
scnpilot_p_inoc_scaffold_4033_curated_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23970..24500
DNA (531bp) protein (177aa)
NhaP-type Na+/H+ and K+/H+ antiporter id=1262442 bin=GWE1_Burkholderiales_65_30 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
NhaP-type Na+/H+ and K+/H+ antiporter; K11105 cell volume regulation protein A
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Displaying 30 items

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