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scnpilot_p_inoc_scaffold_1995_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1995_curated_1
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..316)
DNA (315bp) protein (105aa)
RNA polymerase subunit sigma-24 n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F648B
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:CDY77133.1}; RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KDR41946.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
FecI-like sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_1995_curated_2
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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503..1426
DNA (924bp) protein (308aa)
Transcriptional regulator, AraC family n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8YYA9_XANCT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EKU23699.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
transcriptional regulator protein
scnpilot_p_inoc_scaffold_1995_curated_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1517..3763)
DNA (2247bp) protein (749aa)
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; K07303 isoquinoline 1-oxidoreductase, beta subunit [EC:1.3.99.16]
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding id=1262454 bin=GWE1_Burkholderiales_65_30 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_p_inoc_scaffold_1995_curated_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3777..4250)
DNA (474bp) protein (158aa)
iorA; isoquinoline 1-oxidoreductase subunit alpha (EC:1.3.99.16); K07302 isoquinoline 1-oxidoreductase, alpha subunit [EC:1.3.99.16] id=5079893 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ralstonia solanacearum genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
(2fe-2S)-binding domain-containing protein; K07302 isoquinoline 1-oxidoreductase, alpha subunit [EC:1.3.99.16]
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_1995_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4522..5604
DNA (1083bp) protein (361aa)
TRAP dicarboxylate transporter subunit DctP n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MV02_9BURK
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:EIK93042.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
fcbT1; periplasmic protein
scnpilot_p_inoc_scaffold_1995_curated_6
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5721..6659
DNA (939bp) protein (313aa)
Conjugal transfer protein TrbL n=5 Tax=Gammaproteobacteria RepID=U3H4F6_PSEAC
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AIG04219.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
trbL; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
scnpilot_p_inoc_scaffold_1995_curated_7
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6684..7388
DNA (705bp) protein (235aa)
Conjugal transfer protein TrbF n=1 Tax=Pseudomonas aeruginosa BWHPSA010 RepID=U9MGR0_PSEAI
VirB8 protein {ECO:0000313|EMBL:KDD60173.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
trbF; conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_p_inoc_scaffold_1995_curated_8
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7385..8377
DNA (993bp) protein (331aa)
Conjugal transfer protein TrbG n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL96_BORPD
trbG1; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:CAP42557.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_p_inoc_scaffold_1995_curated_9
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8380..10068
DNA (1689bp) protein (563aa)
Conjugal transfer protein TrbI n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL99_BORPD
trbI1; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Conjugal transfer protein TrbI {ECO:0000313|EMBL:CAP42558.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_p_inoc_scaffold_1995_curated_10
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10211..11365
DNA (1155bp) protein (385aa)
NADH-flavin oxidoreductase/NADH oxidase (EC:1.3.1.34); K00219 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]
NADH-flavin oxidoreductase/NADH oxidase n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39MI6_BURS3
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG22404.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
scnpilot_p_inoc_scaffold_1995_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11725..12648
DNA (924bp) protein (308aa)
ornithine cyclodeaminase; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUZ9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK93039.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_1995_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12645..13367
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUZ8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK93038.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1995_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13378..14172)
DNA (795bp) protein (265aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY7_9BURK
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EIK93027.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
enoyl-CoA hydratase
scnpilot_p_inoc_scaffold_1995_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14187..15050)
DNA (864bp) protein (288aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY6_9BURK
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:EIK93026.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
L-carnitine dehydratase/bile acid-inducible protein F
scnpilot_p_inoc_scaffold_1995_curated_15
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15238..16137)
DNA (900bp) protein (300aa)
FadE34 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY5_9BURK
FadE34 {ECO:0000313|EMBL:EIK93025.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
acyl-CoA dehydrogenase domain-containing protein
scnpilot_p_inoc_scaffold_1995_curated_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16134..17285)
DNA (1152bp) protein (384aa)
Acyl-dehydrogenase {ECO:0000313|EMBL:EIK93024.1}; EC=1.3.8.- {ECO:0000313|EMBL:EIK93024.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Acyl-dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY4_9BURK
yngJ; putative acyl-CoA dehydrogenase yngJ
scnpilot_p_inoc_scaffold_1995_curated_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17305..18126)
DNA (822bp) protein (274aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY3_9BURK
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:EIK93023.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
fabG; 3-oxoacyl-ACP reductase
scnpilot_p_inoc_scaffold_1995_curated_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18123..19121)
DNA (999bp) protein (333aa)
Extra-cytoplasmic solute receptor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY2_9BURK
Extra-cytoplasmic solute receptor {ECO:0000313|EMBL:EIK93022.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
h16_A3350; extra-cytoplasmic solute receptor
scnpilot_p_inoc_scaffold_1995_curated_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19310..20098
DNA (789bp) protein (263aa)
Putative IclR-family regulatory protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY1_9BURK
Putative IclR-family regulatory protein {ECO:0000313|EMBL:EIK93021.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
iclR; IclR family regulatory protein
scnpilot_p_inoc_scaffold_1995_curated_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20130..21677)
DNA (1548bp) protein (516aa)
outer membrane autotransporter barrel domain-containing protein; K12685 subtilase-type serine protease [EC:3.4.21.-]
Outer membrane autotransporter barrel domain-containing protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUW8_9BURK
Outer membrane autotransporter barrel domain-containing protein {ECO:0000313|EMBL:EIK93008.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Displaying 20 items

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