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scnpilot_p_inoc_scaffold_2130_curated_5

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 3397..4062

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000313|EMBL:EIK91631.1}; EC=5.4.99.12 {ECO:0000313|EMBL:EIK91631.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.9
  • Coverage: 219.0
  • Bit_score: 386
  • Evalue 2.00e-104
rluA; ribosomal large subunit pseudouridine synthase A (EC:4.2.1.70); K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] similarity KEGG
DB: KEGG
  • Identity: 61.6
  • Coverage: 216.0
  • Bit_score: 259
  • Evalue 8.10e-67
Pseudouridine synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQZ1_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 84.9
  • Coverage: 219.0
  • Bit_score: 386
  • Evalue 1.40e-104

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGGACGTTGTCGACGATTTGCGCGTGGTGCACGAGGACGAGGCCCTGGTGGTGCTGGACAAGCCCTCGGGCCTGCTGGCCGTGCCGGGCCGCGGCCCGGACAAGCAGGACTGCCTGAGCGCGCGCGCCCAGGCGCGCTGGGCCGACGCCCTGATCGTGCACCGCCTGGACATGGCCACCTCCGGCCTGGTGGTGATGGCGCGCGGCCTGGCCATGCAGCGCGCCCTGTCCCTGGCCTTCGAGAAGCGCCGCGTGCACAAGCGCTACACCGCCGTGGTGGCCGGGCGGCTCGACAACCCCGACCCCGGCAATGGCTGGCAGACCATCGACCTGCCGCTCATGATCGACTGGCTCAACCGGCCGCGCAGCATCGTGCACCACGGCATGGGCAAGCCCAGCCTGACGCGCTGGCGGCTGGCCGGCGATGACCCAGCCCCGCGCACGGGCTTGGTCACACGCTTAGAACTGGAGCCCGTGACCGGCCGCACCCACCAGCTGCGCGTGCACCTGCAGGCCATCGGCCACCCCATCGCGGGCGACCCGCTCTACGCGGACGGGACACAACGCGCCCTGGCCGAGCGCTTGCTGCTGCACGCGGGCTGGCTCGCCCTGCCGCACCCGCTCAGCGGCGACACGCTCGAACTGCACAGCCCTTGTCCCTTCTGA
PROTEIN sequence
Length: 222
MDVVDDLRVVHEDEALVVLDKPSGLLAVPGRGPDKQDCLSARAQARWADALIVHRLDMATSGLVVMARGLAMQRALSLAFEKRRVHKRYTAVVAGRLDNPDPGNGWQTIDLPLMIDWLNRPRSIVHHGMGKPSLTRWRLAGDDPAPRTGLVTRLELEPVTGRTHQLRVHLQAIGHPIAGDPLYADGTQRALAERLLLHAGWLALPHPLSGDTLELHSPCPF*