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scnpilot_p_inoc_scaffold_2130_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2130_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..107)
DNA (105bp) protein (35aa)
Ribosome biogenesis GTPase A n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQZ5_9BURK
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
GTP-binding protein; K14540 ribosome biogenesis GTPase A
scnpilot_p_inoc_scaffold_2130_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

246..728
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQZ4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91634.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2130_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(749..2317)
DNA (1569bp) protein (523aa)
Glutamate--cysteine ligase {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391};; Gamma-ECS {ECO:0000256|HAMAP-Rule:MF_00578}; Gamma-glutamylcysteine synthetase {ECO:0000256|HAMAP-Rule:MF_00578}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
gshA2; glutamate--cysteine ligase GshA (EC:6.3.2.2)
Glutamate--cysteine ligase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQZ3_9BURK
scnpilot_p_inoc_scaffold_2130_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2352..3338)
DNA (987bp) protein (329aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
dihydrouridine synthase; K05541 tRNA-dihydrouridine synthase C [EC:1.-.-.-]
tRNA-dihydrouridine synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQZ2_9BURK
scnpilot_p_inoc_scaffold_2130_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3397..4062
DNA (666bp) protein (222aa)
Pseudouridine synthase {ECO:0000313|EMBL:EIK91631.1}; EC=5.4.99.12 {ECO:0000313|EMBL:EIK91631.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
rluA; ribosomal large subunit pseudouridine synthase A (EC:4.2.1.70); K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQZ1_9BURK
scnpilot_p_inoc_scaffold_2130_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4089..4865
DNA (777bp) protein (259aa)
Short-chain dehydrogenase/reductase sdr n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQZ0_9BURK
Short-chain dehydrogenase/reductase sdr {ECO:0000313|EMBL:EIK91630.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
short-chain dehydrogenase/reductase SDR
scnpilot_p_inoc_scaffold_2130_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4940..6124
DNA (1185bp) protein (395aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EIK91628.1}; EC=2.3.1.9 {ECO:0000313|EMBL:EIK91628.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY8_9BURK
scnpilot_p_inoc_scaffold_2130_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6133..7320
DNA (1188bp) protein (396aa)
Lipase/esterase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY7_9BURK
Lipase/esterase {ECO:0000313|EMBL:EIK91627.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
beta-lactamase
scnpilot_p_inoc_scaffold_2130_curated_9
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7504..8040
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KXQ7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGI75332.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2130_curated_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8069..8965)
DNA (897bp) protein (299aa)
Class I cytochrome c n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY5_9BURK
Class I cytochrome c {ECO:0000313|EMBL:EIK91625.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
class I cytochrome c
scnpilot_p_inoc_scaffold_2130_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9068..9805)
DNA (738bp) protein (246aa)
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY2_9BURK
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIK91622.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2130_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9912..10811)
DNA (900bp) protein (300aa)
LysR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY1_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:EIK91621.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_2130_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10817..11380)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQY0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91620.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2130_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11474..12007
DNA (534bp) protein (178aa)
Cupin n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX9_9BURK
Cupin {ECO:0000313|EMBL:EIK91619.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
cupin 2 barrel-domain containing protein
scnpilot_p_inoc_scaffold_2130_curated_15
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12102..12971
DNA (870bp) protein (290aa)
membrane protein n=1 Tax=Acidovorax avenae RepID=UPI0002DCDD25
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
scnpilot_p_inoc_scaffold_2130_curated_16
unknown

Not on your lists

12983..13744
DNA (762bp) protein (254aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2130_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13729..14232
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH30_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98771.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2130_curated_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14385..15128)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91617.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
putative biofilm formation/stress response factor
scnpilot_p_inoc_scaffold_2130_curated_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15230..16060
DNA (831bp) protein (277aa)
Integral membrane protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX6_9BURK
Integral membrane protein {ECO:0000313|EMBL:EIK91616.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2130_curated_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16061..16423)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91615.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2130_curated_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16420..16719)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91614.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_2130_curated_22
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16716..18437)
DNA (1722bp) protein (574aa)
long-chain-fatty-acid--CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] id=5079471 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
long-chain-fatty-acid--CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_p_inoc_scaffold_2130_curated_23
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18661..19698
DNA (1038bp) protein (346aa)
Extracellular solute-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX2_9BURK
Extracellular solute-binding protein {ECO:0000313|EMBL:EIK91612.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
extracellular solute-binding protein; K09969 general L-amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2130_curated_24
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19804..20982
DNA (1179bp) protein (393aa)
Amino acid ABC transporter permease n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX1_9BURK
Amino acid ABC transporter permease {ECO:0000313|EMBL:EIK91611.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
amino acid ABC transporter permease; K09970 general L-amino acid transport system permease protein
scnpilot_p_inoc_scaffold_2130_curated_25
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20988..22091
DNA (1104bp) protein (368aa)
Amino acid ABC transporter permease n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQX0_9BURK
Amino acid ABC transporter permease {ECO:0000313|EMBL:EIK91610.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
amino acid ABC transporter permease; K09971 general L-amino acid transport system permease protein
scnpilot_p_inoc_scaffold_2130_curated_26
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22101..22853
DNA (753bp) protein (251aa)
ABC transporter-like protein {ECO:0000313|EMBL:EIK91609.1}; EC=3.6.3.27 {ECO:0000313|EMBL:EIK91609.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ABC transporter-like protein; K09972 general L-amino acid transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQW9_9BURK
scnpilot_p_inoc_scaffold_2130_curated_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22932..23681
DNA (750bp) protein (250aa)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:EIK91608.1}; EC=3.1.4.- {ECO:0000313|EMBL:EIK91608.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MQW8_9BURK
Displaying 27 items

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