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scnpilot_p_inoc_scaffold_5307_curated_4

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 4751..5479

Top 3 Functional Annotations

Value Algorithm Source
Rna sigma 28 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIZ1_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 86.8
  • Coverage: 242.0
  • Bit_score: 424
  • Evalue 8.60e-116
Rna sigma 28 {ECO:0000313|EMBL:EIK89181.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.8
  • Coverage: 242.0
  • Bit_score: 424
  • Evalue 1.20e-115
sigma 28 (flagella/sporulation); K02405 RNA polymerase sigma factor for flagellar operon FliA similarity KEGG
DB: KEGG
  • Identity: 50.0
  • Coverage: 232.0
  • Bit_score: 218
  • Evalue 3.00e-54

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Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 729
ATGAGCACCACCGCCTGTTTCGCCGATCCGCGCAACGCCCAGATCCGCCTCTACCAGCCCCTGGTGCGGCGCGTGGCCCGCCACCTGCGCGCCCAGCTGCCGCCCTCGGTCGACGTGGACGACCTGATCCAGGCCGGCATGATCGGCCTGAACGAGGCCATCGGCCGCTGCGACCCGGCCGAGGCCGAGGCCGGCGGGCTGGAGAAATTCGCCATGCCGCGCATCCGCGGCGCCATGATCGACGAGCTGCGCGCGACCGAATGGGCCTCGCGCGGCTGCCGGCAAAGCCGGCGCGACATCGACGAGGCCGCGCAGCGCCTGCAGCAGCGCCTGTGCCGCCGCCCGCACGACAGCGAAATGGCCGCGGAGCTGTGCCTCACGCTCGACGAATACCACGCGCTGCAGGCCAAGCTGCACCGCTCCCAGCTGATGCCGCTGGACGACGCCGGCCTGGTGAGCGAAGAGGACGACGACGGCCTGCACGGCAGCGAGTTCGGCGACAGCACCCACGACCCGCTGAGCGTCCTGGAACAGCAGCGCATGCGCCTGGCCCTGGTCGACGCCATCCAGGGCCTGCCCGAGCGCGAGCAGCAGGTCATGCTCAGGCACTACGGCGAGGACATGATGTTCAAGGACATCGGCCGCGAGCTGGGCGTGAGCGAATCGCGCGTCAGCCAGGTGCACCGCCACGCCATCGACCTGCTGCGCGCCCAACTGCAGGCGCACTGA
PROTEIN sequence
Length: 243
MSTTACFADPRNAQIRLYQPLVRRVARHLRAQLPPSVDVDDLIQAGMIGLNEAIGRCDPAEAEAGGLEKFAMPRIRGAMIDELRATEWASRGCRQSRRDIDEAAQRLQQRLCRRPHDSEMAAELCLTLDEYHALQAKLHRSQLMPLDDAGLVSEEDDDGLHGSEFGDSTHDPLSVLEQQRMRLALVDAIQGLPEREQQVMLRHYGEDMMFKDIGRELGVSESRVSQVHRHAIDLLRAQLQAH*