ggKbase home page

scnpilot_p_inoc_scaffold_1319_curated_1

Organism: scnpilot_dereplicated_Hydrogenophaga_1

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38
Location: 1..1146

Top 3 Functional Annotations

Value Algorithm Source
Putative sigma factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIL0_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 94.2
  • Coverage: 381.0
  • Bit_score: 695
  • Evalue 3.20e-197
Putative sigma factor {ECO:0000313|EMBL:EIK89050.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.2
  • Coverage: 381.0
  • Bit_score: 695
  • Evalue 4.40e-197
RNA polymerase ECF-subfamily sigma factor similarity KEGG
DB: KEGG
  • Identity: 67.4
  • Coverage: 371.0
  • Bit_score: 464
  • Evalue 3.70e-128

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Hydrogenophaga sp. PBC → Hydrogenophaga → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1146
ATCCCCGACAAGCCCGGGGCCTGGCTGATGCGCACCGCGCTCAACCGCGCGCTCGACCACCTGCGCCAGCGCGCCACGCGCGAGGGGCACGAGGCCGACATCGCCGCCGACCTGGTGGCCCTGCAGGCCGACCGCGCGCCCGACGTGGCCGAGCTGGTGGACGCCGCACGCCGCGACCCGATCGGCGACGACCTGCTGCGCCTGATCTTCACCGCCTGCCACCCCGTGCTCTCGGCCGACGCGCGTGTCGCGCTCACGCTCAAGCTGCTGGGCGGCCTGAGCACGCACGAGATCGCGCGCGCCGTGCTGCAGACCGAGTCCACCGTGGCGCAGCGCATCGTGCGCGCGCAGCGCACCCTGCGCGACGCGGGCGTGCCCTTCGAACTGCCGCACGGCCCCGCGCTGGCCGAGCGCCTGGGCTCGGTGCTGGAGGTCATCTACCTCATCTTCAACGAGGGCTACACGGCCACGCGGGGCAGCGACTGGATGCGCCCCGCGCTGTGCGACGAGGCGCTGCGCCTGGCGCGCGTGCTGGCCGATCTGATGCCGCGAGAGCCCGAGGTGCTGGGTCTGCAGGCGCTGCTGGAGATCCAGGCCTCGCGCAGCGCCGCGCGCACCGACGCGCAGGGCCGCCCCGTGCTGCTGGAGCAGCAGGACCGCGCGCGCTGGGACCGCCTGCTCATCCGCCGCGGGCTGGACGCGCTGTCGCGCGCCGACCTCATCACCGAATCGCCCGGCCCCTACCAGTTGCAGGCGGCCATCGCCGCCTGCCATGCGAGCGCCGCCTCGGTGGAGTCCACCGACTGGGCGCGCATGGCCGCGCTGTACGCCGAGCTGGCGCGCCTGGCGCCCTCGCCCGTGGTGGAGCTCAACCGCGCGGTGGCGGTGTCGCGCCACGCTGGCCCGGCCGCTGGCCTGGCCGTGCTCGCGCCGCTGTTGCAAGAGCCCGCGCTGGCGCGCTACCCCTGGCTCAGCGCGGTGTGCGGCGACCTGCTGCAACAGCTGGGTCGCCGGGCGCAAGCGCGCGAAGCCTTCGAGCGCGCCGCCAGCCTCACCCAGAACGAGGCCGACCAGGCCCTGATGCGCGAGCGCGCCGAGGCGCTGCGCGACACCCCGGCACAACCGCCCCGAGCCGACCGCGCTTAA
PROTEIN sequence
Length: 382
IPDKPGAWLMRTALNRALDHLRQRATREGHEADIAADLVALQADRAPDVAELVDAARRDPIGDDLLRLIFTACHPVLSADARVALTLKLLGGLSTHEIARAVLQTESTVAQRIVRAQRTLRDAGVPFELPHGPALAERLGSVLEVIYLIFNEGYTATRGSDWMRPALCDEALRLARVLADLMPREPEVLGLQALLEIQASRSAARTDAQGRPVLLEQQDRARWDRLLIRRGLDALSRADLITESPGPYQLQAAIAACHASAASVESTDWARMAALYAELARLAPSPVVELNRAVAVSRHAGPAAGLAVLAPLLQEPALARYPWLSAVCGDLLQQLGRRAQAREAFERAASLTQNEADQALMRERAEALRDTPAQPPRADRA*