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scnpilot_p_inoc_scaffold_528_curated

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Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_528_curated_1
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..132
DNA (132bp) protein (44aa)
GIY-YIG nuclease n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036221EA
excinuclease ABC subunit C
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
scnpilot_p_inoc_scaffold_528_curated_2
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(229..1107)
DNA (879bp) protein (293aa)
RNA polymerase sigma factor RpoH n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TXP0_9PROT
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
scnpilot_p_inoc_scaffold_528_curated_3
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1271..2236
DNA (966bp) protein (322aa)
Glycerate dehydrogenase {ECO:0000313|EMBL:CDK98169.1}; EC=1.1.1.29 {ECO:0000313|EMBL:CDK98169.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Glycerate dehydrogenase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EY96_9PROT
lactate dehydrogenase-like oxidoreductase
scnpilot_p_inoc_scaffold_528_curated_4
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2368..3018
DNA (651bp) protein (217aa)
Regulatory protein, TetR n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TXP2_9PROT
Putative transcriptional regulatory protein, TetR family {ECO:0000313|EMBL:CDK98168.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_528_curated_5
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3113..6367)
DNA (3255bp) protein (1085aa)
Putative Histidine kinase {ECO:0000313|EMBL:CDK98151.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CDK98151.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Putative Histidine kinase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F1H2_9PROT
sensor protein gacS
scnpilot_p_inoc_scaffold_528_curated_6
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6398..7234)
DNA (837bp) protein (279aa)
Putative ABC-type phosphate/phosphonate transport system periplasmic component n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EY13_9PROT
Putative ABC-type phosphate/phosphonate transport system periplasmic component {ECO:0000313|EMBL:CDK98150.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
phosphonate ABC transporter periplasmic phosphonate-binding protein; K02044 phosphonate transport system substrate-binding protein
scnpilot_p_inoc_scaffold_528_curated_7
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7412..8386)
DNA (975bp) protein (325aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
biotin synthase and related enzyme; K01012 biotin synthetase [EC:2.8.1.6]
Biotin synthase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TXR1_9PROT
scnpilot_p_inoc_scaffold_528_curated_8
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8508..9686
DNA (1179bp) protein (393aa)
Putative 8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:CDK98146.1}; EC=2.3.1.47 {ECO:0000313|EMBL:CDK98146.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
7-keto-8-aminopelargonate synthetase and related enzyme; K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
Putative 8-amino-7-oxononanoate synthase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F1G7_9PROT
scnpilot_p_inoc_scaffold_528_curated_9
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9683..10315
DNA (633bp) protein (211aa)
Putative Carboxylesterase BioH n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EY09_9PROT
Putative Carboxylesterase BioH {ECO:0000313|EMBL:CDK98145.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hydrolase or acyltransferase
scnpilot_p_inoc_scaffold_528_curated_10
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10312..11037
DNA (726bp) protein (242aa)
Putative methltransferase, enzyme of biotin synthesis n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EY72_9PROT
Putative methltransferase, enzyme of biotin synthesis {ECO:0000313|EMBL:CDK98144.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
SAM-dependent methyltransferase
scnpilot_p_inoc_scaffold_528_curated_11
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11041..11655
DNA (615bp) protein (205aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWH2_9PROT
dethiobiotin synthetase
scnpilot_p_inoc_scaffold_528_curated_12
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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11652..13013
DNA (1362bp) protein (454aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:CAM74980.1}; EC=2.6.1.62 {ECO:0000313|EMBL:CAM74980.1};; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EYB2_9PROT
scnpilot_p_inoc_scaffold_528_curated_13
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12956..13504
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F1G1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDK98141.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_528_curated_14
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13646..14047
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Serratia sp. ATCC 39006 RepID=V3SZ20_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KFX18010.1}; TaxID=555 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacterium carotovorum subsp. carotovorum (Erwinia carotovora; subsp. carotovora).;"
hypothetical protein
scnpilot_p_inoc_scaffold_528_curated_15
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14133..15143
DNA (1011bp) protein (337aa)
Putative Secretion protein HlyD n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EY05_9PROT
Putative Secretion protein HlyD {ECO:0000313|EMBL:CDK98140.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
membrane-fusion protein
scnpilot_p_inoc_scaffold_528_curated_16
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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15146..16396
DNA (1251bp) protein (417aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWH5_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM74982.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
ABC-type transport system; K09808 lipoprotein-releasing system permease protein
scnpilot_p_inoc_scaffold_528_curated_17
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16393..17076
DNA (684bp) protein (228aa)
peptide ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
Lipoprotein releasing system ATP-binding protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWH6_9PROT
Lipoprotein releasing system ATP-binding protein {ECO:0000313|EMBL:CAM74983.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
scnpilot_p_inoc_scaffold_528_curated_18
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17185..17733
DNA (549bp) protein (183aa)
Transcriptional regulator, TetR family n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TWH7_9PROT
Putative Transcriptional regulator, TetR family {ECO:0000313|EMBL:CDK98137.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_528_curated_19
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17753..18856
DNA (1104bp) protein (368aa)
Membrane-fusion protein n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TWH8_9PROT
Membrane-fusion protein {ECO:0000313|EMBL:CAM74985.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
membrane-fusion protein
scnpilot_p_inoc_scaffold_528_curated_20
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18867..21941
DNA (3075bp) protein (1025aa)
Putative multidrug efflux transporter (RND family) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EXZ9_9PROT
Putative multidrug efflux transporter (RND family) {ECO:0000313|EMBL:CDK98135.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
cation/multidrug efflux pump
scnpilot_p_inoc_scaffold_528_curated_21
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21978..23519)
DNA (1542bp) protein (514aa)
Cytochrome cd1 nitrite reductase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0H6_9PROT
Cytochrome cd1 nitrite reductase {ECO:0000313|EMBL:CAM76383.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
nitrite reductase precursor
nirN Rose Kantor (12/4/15)
scnpilot_p_inoc_scaffold_528_curated_22
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23516..24643)
DNA (1128bp) protein (376aa)
Putative Coenzyme PQQ synthesis protein E (Putative nirJ) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EZM5_9PROT
Putative Coenzyme PQQ synthesis protein E (Putative nirJ) {ECO:0000313|EMBL:CDK98607.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
nirJ; heme biosynthesis protein
scnpilot_p_inoc_scaffold_528_curated_23
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24609..25133)
DNA (525bp) protein (175aa)
Transcriptional regulators n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0H8_9PROT
Transcriptional regulators {ECO:0000313|EMBL:CAM76385.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_528_curated_24
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25130..25573)
DNA (444bp) protein (148aa)
Regulatory proteins, AsnC/Lrp n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0H9_9PROT
Regulatory proteins, AsnC/Lrp {ECO:0000313|EMBL:CAM76386.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_528_curated_25
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25578..26072)
DNA (495bp) protein (165aa)
Transcriptional regulators n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0I0_9PROT
Transcriptional regulators {ECO:0000313|EMBL:CAM76387.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_528_curated_26
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26063..26512)
DNA (450bp) protein (150aa)
Regulatory proteins, AsnC/Lrp n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0I1_9PROT
Regulatory proteins, AsnC/Lrp {ECO:0000313|EMBL:CAM76388.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_528_curated_27
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26515..27678)
DNA (1164bp) protein (388aa)
Protein nirF n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EZM8_9PROT
Protein nirF {ECO:0000313|EMBL:CDK98612.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
NirF protein
scnpilot_p_inoc_scaffold_528_curated_28
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27675..28010)
DNA (336bp) protein (112aa)
Cytochrome c55X n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F2A0_9PROT
Cytochrome c55X {ECO:0000313|EMBL:CDK98613.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_528_curated_29
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28007..28768)
DNA (762bp) protein (254aa)
uroporphyrinogen-III methylase; K02303 uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
Putative Tetrapyrrole methylase(putative nirE) n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6EZH9_9PROT
Putative Tetrapyrrole methylase(putative nirE) {ECO:0000313|EMBL:CDK98614.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
scnpilot_p_inoc_scaffold_528_curated_30
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28837..29871)
DNA (1035bp) protein (345aa)
Cytochrome c-552 n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TUE9_9PROT
Cytochrome c-552 {ECO:0000313|EMBL:CAM74256.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
cytochrome c-552 precursor
Displaying items 1-30 of 70 in total

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