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scnpilot_p_inoc_scaffold_6542_curated_4

Organism: scnpilot_dereplicated_Microbacterium_6

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: 1843..2430

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigK n=1 Tax=Microbacterium sp. 292MF RepID=UPI000363409D similarity UNIREF
DB: UNIREF100
  • Identity: 81.0
  • Coverage: 195.0
  • Bit_score: 320
  • Evalue 1.10e-84
RNA polymerase sigma factor SigK {ECO:0000313|EMBL:CDK01677.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.9
  • Coverage: 195.0
  • Bit_score: 312
  • Evalue 5.40e-82
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 75.1
  • Coverage: 193.0
  • Bit_score: 302
  • Evalue 9.60e-80

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Taxonomy

Microbacterium sp. C448 → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 588
GTGATCGACGGCATGGACGTGCCAGACGACGGGGCGGGCACCGTCGATCACGTCGCGGAGCTTCTCGAACGCATCGCGCGCGGTGATCACGAGGCTTTCGCGAGCCTCTACGACATGCTGTCGTCTCGGGTCTTCGGACTCATCCTGCGCGTCGTGGTCGACCGGTCGCAGAGCGAAGAAGTTCTGCAGGAGGTCTTCCTCGAGGTGTGGCAATCCGCCGCGCGCTTCGCTCCGAACAAAGGCCAGGGCAGATCCTGGGTGCTCACGATCGCACACCGCCGAGCCGTTGACCGCGTGCGGGCTTCGCAGGCGAGCGTCGATCGCGACATCCGGATCGGGTTCCGTGACATCGACGTCGCTCACGATGGCGTCGCCGAGCAGGCGGAACTGCGGATCGAGAGCCGACGAGTAACAGAAGCACTCACCGCCCTTCCCGAATCACAGCGCGAGGCCCTCACCCTCGCGTATTTCGGGGGTTACAGTCAGAGCGAGATTGCGGCGCTGGTGGGGGCGCCGCTCGGAACAGTGAAGACCCGGATGCGCGACGGCTTGTCGCGCCTGAGAGCAGAGATGGGGGTGGCCTCATGA
PROTEIN sequence
Length: 196
VIDGMDVPDDGAGTVDHVAELLERIARGDHEAFASLYDMLSSRVFGLILRVVVDRSQSEEVLQEVFLEVWQSAARFAPNKGQGRSWVLTIAHRRAVDRVRASQASVDRDIRIGFRDIDVAHDGVAEQAELRIESRRVTEALTALPESQREALTLAYFGGYSQSEIAALVGAPLGTVKTRMRDGLSRLRAEMGVAS*