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scnpilot_dereplicated_Microbacterium_6

scnpilot-dereplicated_Microbacterium_67_1
In projects: scnpilot-dereplicated  |  SCNpilot_P_inoc  |  SCN_ET-SeqDB_Dereplicated

Consensus taxonomy: Microbacterium  →  Actinomycetales  →  Actinobacteridae  →  Actinobacteria  →  Bacteria

Displaying 35 items
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_50_curated
Genus: Microbacterium (89.15%)
388 442719 bp 67.32 1.00 94.02
scnpilot_p_inoc_scaffold_93_curated
Genus: Microbacterium (70.26%)
350 358596 bp 66.98 1.00 91.70
scnpilot_p_inoc_scaffold_110_curated
Genus: Microbacterium (72.59%)
325 346224 bp 67.49 1.00 92.93
scnpilot_p_inoc_scaffold_286_curated
Genus: Microbacterium (80%)
250 283661 bp 67.20 1.00 91.58
scnpilot_p_inoc_scaffold_225_curated
Genus: Microbacterium (85.31%)
216 232080 bp 67.20 1.00 93.56
scnpilot_p_inoc_scaffold_158_curated
Genus: Microbacterium (65.1%)
192 192467 bp 66.52 1.00 92.45
scnpilot_p_inoc_scaffold_207_curated
Genus: Microbacterium (76.36%)
167 164264 bp 67.23 1.00 92.78
scnpilot_p_inoc_scaffold_321_curated
Genus: Microbacterium (80.41%)
152 159180 bp 67.11 1.00 94.21
scnpilot_p_inoc_scaffold_242_curated
Genus: Microbacterium (94.17%)
128 134823 bp 66.14 1.00 92.61
scnpilot_p_inoc_scaffold_458_curated
Genus: Microbacterium (72.64%)
106 112862 bp 67.19 1.00 94.53
scnpilot_p_inoc_scaffold_355_curated
Genus: Microbacterium (93.81%)
99 98262 bp 66.22 1.00 94.91
scnpilot_p_inoc_scaffold_461_curated
Genus: Microbacterium (87.84%)
78 88867 bp 66.62 1.00 93.93
scnpilot_p_inoc_scaffold_483_curated
Genus: Microbacterium (61.19%)
67 73888 bp 66.43 1.00 92.81
scnpilot_p_inoc_scaffold_565_curated
Genus: Microbacterium (81.97%)
64 61997 bp 67.44 1.00 94.05
scnpilot_p_inoc_scaffold_658_curated
Genus: Microbacterium (77.97%)
59 55392 bp 67.18 1.00 92.40
scnpilot_p_inoc_scaffold_653_curated
Order: Micrococcales (62.26%)
53 52910 bp 65.64 1.00 86.54
scnpilot_p_inoc_scaffold_822_curated
Genus: Microbacterium (58.54%)
41 39841 bp 67.20 1.00 92.59
scnpilot_p_inoc_scaffold_886_curated
Genus: Microbacterium (72.22%)
36 36405 bp 66.02 1.00 90.34
scnpilot_p_inoc_scaffold_931_curated
Genus: Microbacterium (72.73%)
34 34140 bp 67.73 1.00 93.79
scnpilot_p_inoc_scaffold_2176_curated
Class: Actinobacteria (51.52%)
33 24963 bp 67.39 1.00 87.98
scnpilot_p_inoc_scaffold_2248_curated
Class: Actinobacteria (66.67%)
18 13574 bp 67.22 1.00 97.95
scnpilot_p_inoc_scaffold_1331_curated
Genus: Microbacterium (66.67%)
18 22652 bp 67.63 1.00 90.26
scnpilot_p_inoc_scaffold_2129_curated
Order: Micrococcales (82.35%)
17 14217 bp 67.33 1.00 95.48
scnpilot_p_inoc_scaffold_2088_curated
Order: Micrococcales (80%)
15 14503 bp 66.81 1.00 94.47
scnpilot_p_inoc_scaffold_1352_curated
Genus: Microbacterium (66.67%)
15 22450 bp 65.22 1.00 88.73
scnpilot_p_inoc_scaffold_3029_curated
Class: Actinobacteria (81.82%)
11 10645 bp 64.50 1.00 75.16
scnpilot_p_inoc_scaffold_4152_curated
Species: Microbacterium ginsengisoli (100%)
10 9215 bp 68.40 1.00 92.88
scnpilot_p_inoc_scaffold_5691_curated
Species: Microbacterium laevaniformans (88.89%)
9 6918 bp 63.57 1.00 76.93
scnpilot_p_inoc_scaffold_4413_curated
Domain: Bacteria (66.67%)
9 8236 bp 64.85 1.00 91.17
scnpilot_p_inoc_scaffold_6542_curated
Genus: Microbacterium (85.71%)
8 6204 bp 66.47 1.00 75.82
scnpilot_p_inoc_scaffold_10116_curated
Genus: Microbacterium (50%)
6 4635 bp 66.24 1.00 93.59
scnpilot_p_inoc_scaffold_13740_curated
Species: Microbacterium ginsengisoli (66.67%)
3 3712 bp 67.89 1.00 94.07
scnpilot_p_inoc_scaffold_6778_curated
Species: Eimeria brunetti (100%)
1 6096 bp 65.86 1.00 85.73
scnpilot_p_inoc_scaffold_47830_curated
Species: Microbacterium laevaniformans (100%)
1 1412 bp 66.86 1.00 99.86
scnpilot_p_inoc_scaffold_56585_curated
Species: Microbacterium ginsengisoli (100%)
1 1220 bp 68.03 1.00 99.84
Displaying 35 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.