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scnpilot_p_inoc_scaffold_2129_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2129_curated_1
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3..95
DNA (93bp) protein (31aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KIY3_9MICO
Contig_26, whole genome shotgun sequence {ECO:0000313|EMBL:KIP89898.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_p_inoc_scaffold_2129_curated_2
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(92..997)
DNA (906bp) protein (302aa)
LysR substrate-binding protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E751_9MICO
LysR substrate-binding protein {ECO:0000313|EMBL:EIC07245.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_2129_curated_3
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1137..2165
DNA (1029bp) protein (343aa)
4-oxalomesaconate hydratase (EC:4.2.1.83); K10220 4-oxalmesaconate hydratase [EC:4.2.1.83]
Amidohydrolase 2 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E750_9MICO
4-oxalomesaconate hydratase {ECO:0000313|EMBL:KDA05050.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
scnpilot_p_inoc_scaffold_2129_curated_4
Arthrobacter keyseri, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2176..2868
DNA (693bp) protein (231aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC:4.1.3.-); K10218 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
Oxalocitramalate aldolase n=1 Tax=Arthrobacter keyseri RepID=Q9AGL6_9MICC
Oxalocitramalate aldolase {ECO:0000313|EMBL:AAK16525.1}; TaxID=122866 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter keyseri.;"
scnpilot_p_inoc_scaffold_2129_curated_5
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2871..3806
DNA (936bp) protein (312aa)
amidohydrolase 2; K10221 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57]
Amidohydrolase 2 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E748_9MICO
SPG23_c16, whole genome shotgun sequence {ECO:0000313|EMBL:KIS27603.1}; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
scnpilot_p_inoc_scaffold_2129_curated_6
Arthrobacter sp. SPG23, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3809..5167
DNA (1359bp) protein (453aa)
PcmA protein {ECO:0000313|EMBL:KIS27602.1}; EC=1.13.11.8 {ECO:0000313|EMBL:KIS27602.1};; TaxID=1610703 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. SPG23.;"
pcmA; protocatechuate 4,5-dioxygenase (EC:1.13.11.8); K04099 protocatechuate 4,5-dioxygenase [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase, alpha subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E747_9MICO
scnpilot_p_inoc_scaffold_2129_curated_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5240..6196
DNA (957bp) protein (319aa)
4-carboxy-2-hydroxymuconate semialdehyde dehydrogenase (EC:1.1.1.-)
Oxidoreductase domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E746_9MICO
Oxidoreductase domain protein {ECO:0000313|EMBL:EIC07240.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
scnpilot_p_inoc_scaffold_2129_curated_8
Arthrobacter keyseri, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6193..7167
DNA (975bp) protein (325aa)
Dehydrogenase n=1 Tax=Arthrobacter keyseri RepID=Q9AGM0_9MICC
Dehydrogenase {ECO:0000313|EMBL:AAK16522.1}; TaxID=122866 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter keyseri.;"
aldo/keto reductase
scnpilot_p_inoc_scaffold_2129_curated_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7164..7871
DNA (708bp) protein (236aa)
Molybdate ABC transporter periplasmic protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E744_9MICO
Molybdate ABC transporter periplasmic protein {ECO:0000313|EMBL:EIC07238.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
molybdate ABC transporter periplasmic protein; K02020 molybdate transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2129_curated_10
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7889..9178)
DNA (1290bp) protein (430aa)
Amine oxidase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E6J7_9MICO
Amine oxidase {ECO:0000313|EMBL:EIC07283.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
phytoene dehydrogenase
scnpilot_p_inoc_scaffold_2129_curated_11
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9200..9589)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F73DBC
Uncharacterized protein {ECO:0000313|EMBL:KJC64892.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
PPOX class F420-dependent enzyme
scnpilot_p_inoc_scaffold_2129_curated_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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9653..10060
DNA (408bp) protein (136aa)
Transcriptional regulator, AraC family n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVX3_PSEUX
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AEA25458.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
scnpilot_p_inoc_scaffold_2129_curated_13
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(10038..11006)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A774_9MICO
Squalene cyclase {ECO:0000313|EMBL:KIC60295.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2129_curated_14
Cellulosimicrobium sp. MM, Cellulosimicrobium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11113..11526
DNA (414bp) protein (138aa)
Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. EGD-AK10 RepID=U1Z1R1_9BACI
Glyoxalase {ECO:0000313|EMBL:KFD44685.1}; TaxID=1523621 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Cellulosimicrobium.;" source="Cellulosimicrobium sp. MM.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2129_curated_15
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(11551..12240)
DNA (690bp) protein (230aa)
Aspartate racemase n=1 Tax=Streptomyces sp. HGB0020 RepID=S2YGG2_9ACTO
Aspartate racemase {ECO:0000313|EMBL:EPD63598.1}; TaxID=1078086 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
aspartate racemase
scnpilot_p_inoc_scaffold_2129_curated_16
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12327..13283
DNA (957bp) protein (319aa)
Transcriptional regulator, LysR family n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S5K3_GEOOG
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADB75283.1}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
scnpilot_p_inoc_scaffold_2129_curated_17
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13333..14133
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003636FFB
Alpha/beta hydrolase fold containing protein {ECO:0000313|EMBL:CDJ99789.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hydrolase or acyltransferase
Displaying 17 items

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