ggKbase home page

scnpilot_p_inoc_scaffold_565_curated

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_565_curated_1
unknown

Not on your lists

2..79
DNA (78bp) protein (26aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_565_curated_2
unknown

Not on your lists

149..316
DNA (168bp) protein (56aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_565_curated_3
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(317..886)
DNA (570bp) protein (190aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003499BC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV79501.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_p_inoc_scaffold_565_curated_4
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(895..1245)
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003469C5C
Uncharacterized protein {ECO:0000313|EMBL:KJL44197.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
polyketide synthase
scnpilot_p_inoc_scaffold_565_curated_5
Rhodococcus sp. B7740, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1242..3035)
DNA (1794bp) protein (598aa)
hypothetical protein n=1 Tax=Microbacterium sp. B19 RepID=UPI0003B3ECAD
ICC protein {ECO:0000313|EMBL:AJW38608.1}; TaxID=1564114 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. B7740.;"
metallophosphoesterase
scnpilot_p_inoc_scaffold_565_curated_6
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3110..3691)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002FE120C
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components {ECO:0000313|EMBL:BAJ76142.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
scnpilot_p_inoc_scaffold_565_curated_7
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3688..4524)
DNA (837bp) protein (279aa)
archaeal fructose-1,6-bisphosphatase; K05602 histidinol-phosphatase [EC:3.1.3.15]
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000379D041
Histidinol phosphatase {ECO:0000313|EMBL:KIC57675.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
scnpilot_p_inoc_scaffold_565_curated_8
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4936..6177)
DNA (1242bp) protein (414aa)
Major facilitator superfamily MFS_1 n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E465_9MICO
MFS transporter {ECO:0000313|EMBL:EXJ50719.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
permease of the major facilitator superfamily
scnpilot_p_inoc_scaffold_565_curated_9
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6174..6620)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KDK5_9MICO
MarR family protein {ECO:0000313|EMBL:KJL18500.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_565_curated_10
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6800..8002
DNA (1203bp) protein (401aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Microbacterium yannicii RepID=UPI000319ADC1
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EIC08116.1}; Flags: Precursor;; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
ABC branched-chain amino acid transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_565_curated_11
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8015..8806
DNA (792bp) protein (264aa)
ABC transporter related protein n=2 Tax=Microbacterium RepID=H8E468_9MICO
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC57671.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
ABC transporter related protein; K01995 branched-chain amino acid transport system ATP-binding protein
scnpilot_p_inoc_scaffold_565_curated_12
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8803..9546
DNA (744bp) protein (248aa)
branched-chain amino acid ABC transporter ATPase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037414F8
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:KJL35398.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
branched-chain ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein
scnpilot_p_inoc_scaffold_565_curated_13
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9543..10418
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Microbacterium sp. 292MF RepID=UPI000379E7E7
Uncharacterized protein {ECO:0000313|EMBL:EPD84302.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_565_curated_14
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10415..11530
DNA (1116bp) protein (372aa)
ABC transporter permease n=1 Tax=Microbacterium sp. 292MF RepID=UPI000378B730
ABC transporter permease {ECO:0000313|EMBL:KDA05783.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_565_curated_15
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11527..13095
DNA (1569bp) protein (523aa)
AMP-dependent synthetase and ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F49C4E
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EIC08121.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
scnpilot_p_inoc_scaffold_565_curated_16
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13079..13768
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000377CB29
Fatty acid metabolism regulator protein {ECO:0000313|EMBL:KJL35394.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_565_curated_17
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13765..14517
DNA (753bp) protein (251aa)
3-hydroxybutyrate dehydrogenase; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036C4645
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EXJ50724.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
scnpilot_p_inoc_scaffold_565_curated_18
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14514..15422
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000378F686
Alpha/beta hydrolase {ECO:0000313|EMBL:KDA05779.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hydrolase or acyltransferase
scnpilot_p_inoc_scaffold_565_curated_19
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15449..16315)
DNA (867bp) protein (289aa)
IclR family transcriptional regulator n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036FEF72
Regulatory protein IclR {ECO:0000313|EMBL:EIC08125.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_565_curated_20
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16374..17153
DNA (780bp) protein (260aa)
acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Microbacterium yannicii RepID=UPI0002FF484B
Lipoprotein {ECO:0000313|EMBL:KEP75374.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
scnpilot_p_inoc_scaffold_565_curated_21
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17155..17808
DNA (654bp) protein (218aa)
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B {ECO:0000313|EMBL:KJL35389.1}; EC=2.8.3.5 {ECO:0000313|EMBL:KJL35389.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036349A6
scnpilot_p_inoc_scaffold_565_curated_22
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17805..18989
DNA (1185bp) protein (395aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KHK97412.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KHK97412.1};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
acetyl-CoA acetyltransferase n=1 Tax=Microbacterium sp. 292MF RepID=UPI000374CF90
scnpilot_p_inoc_scaffold_565_curated_23
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19007..19270)
DNA (264bp) protein (88aa)
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NCS4_MICTS
Uncharacterized protein {ECO:0000313|EMBL:KJL35387.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
scnpilot_p_inoc_scaffold_565_curated_24
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19340..20734
DNA (1395bp) protein (465aa)
trehalose-6-phosphate synthase; K00697 trehalose 6-phosphate synthase [EC:2.4.1.15]
trehalose-phosphate synthase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037B3C97
Trehalose-6-phosphate synthase {ECO:0000313|EMBL:GAD33142.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
scnpilot_p_inoc_scaffold_565_curated_25
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20767..21585
DNA (819bp) protein (273aa)
trehalose-6-phosphatase; K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12]
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002DFA625
scnpilot_p_inoc_scaffold_565_curated_26
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21595..23301
DNA (1707bp) protein (569aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ilvD; dihydroxyacid dehydratase/phosphogluconate dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
dihydroxy-acid dehydratase n=1 Tax=Microbacterium sp. 292MF RepID=UPI00037912CF
scnpilot_p_inoc_scaffold_565_curated_27
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23346..25148
DNA (1803bp) protein (601aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ilvB; thiamine pyrophosphate-requiring enzyme; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Acetolactate synthase n=1 Tax=Microbacterium sp. TS-1 RepID=U2YJL6_9MICO
scnpilot_p_inoc_scaffold_565_curated_28
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25152..25661
DNA (510bp) protein (170aa)
ilvH; acetolactate synthase, small (regulatory) subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
acetolactate synthase n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003804D84
Acetolactate synthase {ECO:0000313|EMBL:KEP74434.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
scnpilot_p_inoc_scaffold_565_curated_29
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25749..26774
DNA (1026bp) protein (342aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
ketol-acid reductoisomerase (EC:1.1.1.86); K00053 ketol-acid reductoisomerase [EC:1.1.1.86]
ketol-acid reductoisomerase n=1 Tax=Microbacterium sp. 11MF RepID=UPI0003621B6A
scnpilot_p_inoc_scaffold_565_curated_30
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26846..27367
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000308E210
Uncharacterized protein {ECO:0000313|EMBL:EPD84324.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
DNA polymerase III, gamma/tau subunits
Displaying items 1-30 of 64 in total

View Taxonomy