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scnpilot_p_inoc_scaffold_2415_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2415_curated_1
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..1052
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GI94_PROFC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL55816.1}; TaxID=754252 species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 /; CIP 103027 / CIRM-BIA1).;"
scnpilot_p_inoc_scaffold_2415_curated_2
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1108..1518)
DNA (411bp) protein (137aa)
N utilization substance protein B homolog n=2 Tax=Microbacterium RepID=H8E3E3_9MICO
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
nusB; transcription termination factor; K03625 N utilization substance protein B
scnpilot_p_inoc_scaffold_2415_curated_3
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1537..2136)
DNA (600bp) protein (200aa)
Elongation factor P n=2 Tax=Microbacterium RepID=H8E3E2_9MICO
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
efp; translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); K02356 elongation factor P
scnpilot_p_inoc_scaffold_2415_curated_4
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2194..2652)
DNA (459bp) protein (153aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
aroQ; 3-dehydroquinate dehydratase II; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=2 Tax=Microbacterium RepID=H8E3E1_9MICO
scnpilot_p_inoc_scaffold_2415_curated_5
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(2649..3191)
DNA (543bp) protein (181aa)
GCN5-related N-acetyltransferase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3E0_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EXJ50494.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
N-acetyltransferase GCN5
scnpilot_p_inoc_scaffold_2415_curated_6
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(3188..4270)
DNA (1083bp) protein (361aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
aroB; 3-dehydroquinate synthetase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A2W4_9MICO
scnpilot_p_inoc_scaffold_2415_curated_7
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4267..4806)
DNA (540bp) protein (180aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AMH9_9MICO
scnpilot_p_inoc_scaffold_2415_curated_8
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(4803..6014)
DNA (1212bp) protein (404aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase n=2 Tax=Microbacterium RepID=H8E3D7_9MICO
scnpilot_p_inoc_scaffold_2415_curated_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6019..6876)
DNA (858bp) protein (286aa)
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase substrate binding domain protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3D6_9MICO
Shikimate dehydrogenase substrate binding domain protein {ECO:0000313|EMBL:EIC08686.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
scnpilot_p_inoc_scaffold_2415_curated_10
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(6857..8320)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3B493_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD83394.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
periplasmic solute-binding protein; K07082 UPF0755 protein
scnpilot_p_inoc_scaffold_2415_curated_11
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8320..8793)
DNA (474bp) protein (158aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
endonuclease; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase n=2 Tax=Microbacterium RepID=H8E3D4_9MICO
scnpilot_p_inoc_scaffold_2415_curated_12
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8790..11453)
DNA (2664bp) protein (888aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3D3_9MICO
scnpilot_p_inoc_scaffold_2415_curated_13
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(11524..11814)
DNA (291bp) protein (97aa)
ATPase n=2 Tax=Microbacterium RepID=H8E3D2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD83391.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
ATPase
scnpilot_p_inoc_scaffold_2415_curated_14
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(11902..12531)
DNA (630bp) protein (210aa)
30S ribosomal protein S4 n=2 Tax=Microbacterium RepID=H8E3D1_9MICO
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
rpsD; ribosomal protein S4; K02986 small subunit ribosomal protein S4
Displaying 14 items

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