ggKbase home page

scnpilot_p_inoc_scaffold_1311_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1311_curated_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

124..651
DNA (528bp) protein (176aa)
Transcription termination/antitermination factor NusG n=3 Tax=Parabacteroides RepID=A7AFP3_9PORP
Transcription termination/antitermination factor NusG {ECO:0000313|EMBL:CDD14761.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
nusg antitermination factor
scnpilot_p_inoc_scaffold_1311_curated_2
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

667..1899
DNA (1233bp) protein (411aa)
AraC family transcriptional regulator
Helix-turn-helix-domain containing protein AraC type id=4402575 bin=GWA2_Flavobacterium_35_26 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_p_inoc_scaffold_1311_curated_3
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1907..2725)
DNA (819bp) protein (273aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZK33_9BACE
scnpilot_p_inoc_scaffold_1311_curated_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2727..3599)
DNA (873bp) protein (291aa)
ATP-nad/acox kinase; K00858 NAD+ kinase [EC:2.7.1.23]
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8F0_PALPW
scnpilot_p_inoc_scaffold_1311_curated_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3711..4424
DNA (714bp) protein (238aa)
pyridoxine 5'-phosphate synthase (EC:2.6.99.2); K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2]
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Pyridoxine 5'-phosphate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E9_PALPW
scnpilot_p_inoc_scaffold_1311_curated_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4455..5129
DNA (675bp) protein (225aa)
Putative biopolymer transport protein ExbB n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JCU1_9PORP
biopolymer transport protein ExbB; K03561 biopolymer transport protein ExbB
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5136..5555
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:144 RepID=R5Y8X1_9BACE
transport energizing protein, ExbD/TolR family; K03559 biopolymer transport protein ExbD
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5568..6281
DNA (714bp) protein (238aa)
TonB family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E8_PALPW
tonb family protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6283..6831
DNA (549bp) protein (183aa)
DJ-1 family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E7_PALPW
dj-1 family protein; K03152 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis
DJ-1 family protein {ECO:0000313|EMBL:ADQ80991.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_1311_curated_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6876..7985)
DNA (1110bp) protein (370aa)
methylmalonyL-CoA mutase metallochaperone meab; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
Methylmalonyl-CoA mutase metallochaperone MeaB n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T167_PALPW
Methylmalonyl-CoA mutase metallochaperone MeaB {ECO:0000313|EMBL:ADQ78448.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_1311_curated_11
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7992..8384)
DNA (393bp) protein (131aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=B7BFY6_9PORP
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_12
GWC2_OD1_42_6_partial, Parcubacteria, Bacteria

Not on your lists

comp(8459..9226)
DNA (768bp) protein (256aa)
UPF0246 protein Palpr_0152 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0F5_PALPW
Uncharacterized protein {ECO:0000313|EMBL:KKS67409.1}; TaxID=1618928 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_6.;"
hypothetical protein; K09861 hypothetical protein
scnpilot_p_inoc_scaffold_1311_curated_13
GWC2_OD1_42_6_partial, Parcubacteria, Bacteria

Not on your lists

comp(9286..9660)
DNA (375bp) protein (125aa)
Bacterial nucleoid protein Hbs n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E6_PALPW
Bacterial nucleoid protein Hbs {ECO:0000313|EMBL:KKS67410.1}; TaxID=1618928 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_6.;"
bacterial nucleoid protein hbs; K03530 DNA-binding protein HU-beta
scnpilot_p_inoc_scaffold_1311_curated_14
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9752..10549
DNA (798bp) protein (266aa)
Rhomboid family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E5_PALPW
rhomboid family protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_15
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10561..11448
DNA (888bp) protein (296aa)
Rhomboid family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E4_PALPW
rhomboid family protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_16
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11471..12577
DNA (1107bp) protein (369aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E3_PALPW
endonuclease/exonuclease/phosphatase
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12603..12980
DNA (378bp) protein (126aa)
Glycine cleavage system H protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E2_PALPW
glycine cleavage system h protein; K02437 glycine cleavage system H protein
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_1311_curated_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13022..13504
DNA (483bp) protein (161aa)
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E1_PALPW
scnpilot_p_inoc_scaffold_1311_curated_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13509..14768
DNA (1260bp) protein (420aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] rbh
Phosphoglycerate kinase n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6ATB0_9BACE
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_1311_curated_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15101..15595
DNA (495bp) protein (165aa)
Redoxin domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T152_PALPW
redoxin domain protein
Redoxin domain protein {ECO:0000313|EMBL:ADQ78433.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_1311_curated_21
GWE2_Bacteroidetes_39_28_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15647..16252
DNA (606bp) protein (202aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=1885852 bin=GWE2_Bacteroidetes_39_28 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_39_28 organism_group=Bacteroidetes
alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen
Tax=GWE2_Bacteroidetes_39_28_curated
scnpilot_p_inoc_scaffold_1311_curated_22
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16731..18179
DNA (1449bp) protein (483aa)
Putative uncharacterized protein n=2 Tax=Dysgonomonas RepID=F8X3H9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK05392.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
transposase
scnpilot_p_inoc_scaffold_1311_curated_23
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18192..18740
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F4DF8
ORF6N domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EFR56865.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
scnpilot_p_inoc_scaffold_1311_curated_24
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19033..19554
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RHU6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA56189.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1311_curated_25
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19608..20135)
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X1V9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK06093.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
anti-restriction protein
scnpilot_p_inoc_scaffold_1311_curated_26
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20597..21994
DNA (1398bp) protein (466aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXN0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EGK04438.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22836.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1311_curated_27
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22021..22854
DNA (834bp) protein (278aa)
exc; transposon excision protein (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2]
Putative transposon excision protein n=1 Tax=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) RepID=Q5LFX0_BACFN
DNA topoisomerase I {ECO:0000313|EMBL:KGN76386.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
Displaying 27 items

View Taxonomy