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scnpilot_p_inoc_scaffold_21_curated

Search features with annotation key words

Displaying items 211-240 of 379 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_21_curated_211
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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270429..271694
DNA (1266bp) protein (422aa)
Peptidase M23 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T617_PALPW
peptidase m23
Peptidase M23 {ECO:0000313|EMBL:ADQ80161.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_21_curated_212
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

271744..273582
DNA (1839bp) protein (613aa)
DNA topoisomerase type IIia subunit b region 2 domain-containing protein; K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase type IIA subunit B region 2 domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T618_PALPW
DNA topoisomerase type IIA subunit B region 2 domain protein {ECO:0000313|EMBL:ADQ80162.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_21_curated_213
Bacteroides sp. CAG:661, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

273585..274016
DNA (432bp) protein (144aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1262746 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:661.;"
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Bacteroides sp. CAG:661 RepID=R5S580_9BACE
cmp/dcmp deaminase zinc-binding protein
scnpilot_p_inoc_scaffold_21_curated_214
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

274026..277277
DNA (3252bp) protein (1084aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
UvrD/REP helicase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T594_PALPW
uvrd/rep helicase
scnpilot_p_inoc_scaffold_21_curated_215
Bacteroides sp. CAG:462, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

277374..278021
DNA (648bp) protein (216aa)
phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase bacterial n=1 Tax=Bacteroides sp. CAG:462 RepID=R7D149_9BACE
Phosphoglycolate phosphatase bacterial {ECO:0000313|EMBL:CDD84289.1}; TaxID=1262740 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:462.;"
scnpilot_p_inoc_scaffold_21_curated_216
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(278181..279176)
DNA (996bp) protein (332aa)
tryptophanyL-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Tryptophan--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T698_PALPW
scnpilot_p_inoc_scaffold_21_curated_217
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(279188..279643)
DNA (456bp) protein (152aa)
Transcriptional regulator, AsnC family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T697_PALPW
ArsR family transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_218
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(279708..280568)
DNA (861bp) protein (287aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T696_PALPW
peptidylprolyl isomerase fkbp-type
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_219
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(280587..281066)
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T695_PALPW
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_220
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(281080..281853)
DNA (774bp) protein (258aa)
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T694_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_221
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(281878..282462)
DNA (585bp) protein (195aa)
peptidyl-prolyl isomerase (EC:5.2.1.8); K03773 FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T693_PALPW
scnpilot_p_inoc_scaffold_21_curated_222
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(282538..284091)
DNA (1554bp) protein (518aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T691_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80235.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_21_curated_223
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

284308..285306
DNA (999bp) protein (333aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T690_PALPW
scnpilot_p_inoc_scaffold_21_curated_224
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(285564..286325)
DNA (762bp) protein (254aa)
carbohydrate esterase family 12 protein n=1 Tax=Thermophagus xiamenensis RepID=UPI000255D9F5
Carbohydrate esterase {ECO:0000313|EMBL:KGO86134.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
G-D-S-L family lipolytic protein
scnpilot_p_inoc_scaffold_21_curated_225
Capnocytophaga sp. oral taxon 329, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

286447..287400
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Psychroflexus tropicus RepID=UPI00037A909A
Uncharacterized protein {ECO:0000313|EMBL:KHE69066.1}; TaxID=706436 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 329 str. F0087.;"
scnpilot_p_inoc_scaffold_21_curated_226
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(287443..290319)
DNA (2877bp) protein (959aa)
Putative uncharacterized protein id=4203263 bin=GWF2_Bacteroidetes_41_9 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes
hypothetical protein
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_p_inoc_scaffold_21_curated_227
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(290333..290713)
DNA (381bp) protein (127aa)
Putative uncharacterized protein id=4724920 bin=GWC2_Bacteroidetes_40_22 species=Bacteroidetes oral taxon 274 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_22 organism_group=Bacteroidetes
Tax=GWA2_Bacteroidetes_40_15_curated
scnpilot_p_inoc_scaffold_21_curated_228
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

290820..292958
DNA (2139bp) protein (713aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T510_PALPW
scnpilot_p_inoc_scaffold_21_curated_229
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

293168..293977
DNA (810bp) protein (270aa)
Putative HTH-type transcriptional regulator in mcrB 3'region n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GG99_9BACT
putative transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_21_curated_230
Sanguibacteroides justesenii, Sanguibacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

294071..295297
DNA (1227bp) protein (409aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AFV7_9PORP
outer membrane lipoprotein
Membrane protein {ECO:0000313|EMBL:KIO45840.1}; TaxID=1547597 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Sanguibacteroides.;" source="Sanguibacteroides justesenii.;"
scnpilot_p_inoc_scaffold_21_curated_231
BJP_IG2069_Bacteroidetes_43_11, Bacteroidetes, Bacteria

Not on your lists

295318..296070
DNA (753bp) protein (251aa)
Tax=BJP_IG2069_Bacteroidetes_43_11
scnpilot_p_inoc_scaffold_21_curated_232
unknown

Not on your lists

296074..297165
DNA (1092bp) protein (364aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_21_curated_233
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

297263..297718
DNA (456bp) protein (152aa)
DUF1801 domain-containing protein n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2CY45_9BACT
DUF1801 domain-containing protein {ECO:0000313|EMBL:EOZ91509.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_21_curated_234
RBG_19FT_COMBO_Bacteroidetes_42_10_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(297719..300439)
DNA (2721bp) protein (907aa)
Signal transduction histidine kinase n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N9C1_9BURK
signal transduction histidine kinase
Tax=RBG_19FT_COMBO_Bacteroidetes_42_10_curated
scnpilot_p_inoc_scaffold_21_curated_235
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

300568..301995
DNA (1428bp) protein (476aa)
d-alanyL-d-alaninecarboxypeptidase/d-alanyL-d-alanine-endopeptidase (EC:3.4.16.4); K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase {ECO:0000313|EMBL:ADQ79806.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ADQ79806.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
D-alanyl-D-alaninecarboxypeptidase/ D-alanyl-D-alanine-endopeptidase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T512_PALPW
scnpilot_p_inoc_scaffold_21_curated_236
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

302085..303533
DNA (1449bp) protein (483aa)
tryptophanase (EC:4.1.99.1); K01667 tryptophanase [EC:4.1.99.1]
Tryptophanase {ECO:0000313|EMBL:ADQ79967.1}; EC=4.1.99.1 {ECO:0000313|EMBL:ADQ79967.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Tryptophanase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5H3_PALPW
scnpilot_p_inoc_scaffold_21_curated_237
Chlorobaculum parvum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

303645..304454
DNA (810bp) protein (270aa)
Zinc transporter ZupT n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=ZUPT_CHLP8 rbh
zinc transporter ZupT; K07238 zinc transporter, ZIP family
Zinc transporter ZupT {ECO:0000255|HAMAP-Rule:MF_00548}; TaxID=517417 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp.; thiosulfatophilum (strain DSM 263 / NCIB 8327)).;"
scnpilot_p_inoc_scaffold_21_curated_238
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

304468..305400
DNA (933bp) protein (311aa)
methionine synthase (EC:2.1.1.13)
Methionine synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5X7_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_239
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

305448..306122
DNA (675bp) protein (225aa)
tRNA (guanine37-n(1)-) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5X8_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_240
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

306152..307126
DNA (975bp) protein (325aa)
N-acetyL-gamma-glutamyL-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5Y2_PALPW
Displaying items 211-240 of 379 in total

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