ggKbase home page

scnpilot_p_inoc_scaffold_622_curated

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_622_curated_1
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

436..1038
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKT8_AFIFE
site-specific recombinase XerD
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_622_curated_2
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1035..2000
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NEL2_AFIFE
tyrosine recombinase XerD
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_622_curated_3
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1993..3003
DNA (1011bp) protein (337aa)
integrase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287AE65
tyrosine recombinase XerC
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_622_curated_4
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3077..3253)
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=C6KUZ5_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_622_curated_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3702..4040)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J3P4_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ72180.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
scnpilot_p_inoc_scaffold_622_curated_6
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4040..4300)
DNA (261bp) protein (87aa)
Putative plasmid stabilization system antidote protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RNM8_9RHOB
Addiction module antitoxin {ECO:0000313|EMBL:KJV08389.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
putative plasmid stabilization system antidote protein
scnpilot_p_inoc_scaffold_622_curated_7
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4407..4880)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F515
Uncharacterized protein {ECO:0000313|EMBL:EEW25020.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_622_curated_8
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4980..7172)
DNA (2193bp) protein (731aa)
ParB domain protein nuclease id=3002239 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
DNA-binding protein {ECO:0000313|EMBL:KJS44110.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
yubM; ParB domain-containing protein nuclease
scnpilot_p_inoc_scaffold_622_curated_9
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7323..8501)
DNA (1179bp) protein (393aa)
Replication protein C id=3002229 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Replication protein C {ECO:0000313|EMBL:EEW25022.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
repC; plasmid replication protein RepC
scnpilot_p_inoc_scaffold_622_curated_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8732..9688)
DNA (957bp) protein (319aa)
Plasmid partitioning protein RepB id=3002222 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
plasmid partitioning protein RepB
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_622_curated_11
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9678..10886)
DNA (1209bp) protein (403aa)
Plasmid partitioning protein RepA n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1S6_9RHOB
Plasmid partitioning protein RepA {ECO:0000313|EMBL:EEW25024.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
replication protein A
scnpilot_p_inoc_scaffold_622_curated_12
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11330..12214)
DNA (885bp) protein (295aa)
Resolvase domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1S7_9RHOB
DNA invertase {ECO:0000313|EMBL:KJS44111.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
resolvase domain-containing protein
scnpilot_p_inoc_scaffold_622_curated_13
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12743..13513
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W8W6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJS42401.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
hypothetical protein
scnpilot_p_inoc_scaffold_622_curated_14
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13670..15217
DNA (1548bp) protein (516aa)
Extracellular solute-binding protein family 5 n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1T5_9RHOB
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:EEW25033.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
nickel ABC transporter periplasmic ligand binding protein; K15584 nickel transport system substrate-binding protein
scnpilot_p_inoc_scaffold_622_curated_15
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15240..16181
DNA (942bp) protein (314aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1T6_9RHOB
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EEW25034.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
nickel ABC transporter inner membrane protein; K02033 peptide/nickel transport system permease protein
scnpilot_p_inoc_scaffold_622_curated_16
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16192..17085
DNA (894bp) protein (298aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1T7_9RHOB
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EEW25035.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
nickel ABC transporter inner membrane protein; K02034 peptide/nickel transport system permease protein
scnpilot_p_inoc_scaffold_622_curated_17
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17082..18086
DNA (1005bp) protein (335aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1T8_9RHOB
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:EEW25036.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
nickel ABC transporter ATPase subunit; K02031 peptide/nickel transport system ATP-binding protein
scnpilot_p_inoc_scaffold_622_curated_18
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18079..19050
DNA (972bp) protein (324aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1T9_9RHOB
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:EEW25037.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
nickel ABC transporter ATPase subunit; K02032 peptide/nickel transport system ATP-binding protein
scnpilot_p_inoc_scaffold_622_curated_19
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19053..19784
DNA (732bp) protein (244aa)
Transcriptional regulator, GntR family n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1U0_9RHOB
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEW25038.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
GntR family transcriptional regulator; K05836 GntR family transcriptional regulator, histidine utilization repressor
scnpilot_p_inoc_scaffold_622_curated_20
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19840..20727)
DNA (888bp) protein (296aa)
Transmembrane anchor protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EFX4_9RHOB
Transmembrane anchor protein {ECO:0000313|EMBL:ESW59144.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_622_curated_21
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20743..21468)
DNA (726bp) protein (242aa)
Putative ORF1 (Plasmid pTOM9) n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1U5_9RHOB
Putative ORF1 (Plasmid pTOM9) {ECO:0000313|EMBL:EEW25043.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_622_curated_22
bacterium YEK0313, Bacteria

Not on your lists

22114..22392
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ8_9RHIZ
Copper-sensing transcriptional repressor CsoR {ECO:0000313|EMBL:CEJ15994.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein; K07807 hypothetical protein NreA
scnpilot_p_inoc_scaffold_622_curated_23
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22400..23836
DNA (1437bp) protein (479aa)
Cation diffusion facilitator family transporter n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1U3_9RHOB
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EEW25041.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
transmembrane efflux protein
scnpilot_p_inoc_scaffold_622_curated_24
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23857..25161
DNA (1305bp) protein (435aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1U2_9RHOB
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EEW25040.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
nrbE-like protein
scnpilot_p_inoc_scaffold_622_curated_25
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25216..25809)
DNA (594bp) protein (198aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7ER45_9RHOB
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_622_curated_26
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25993..26487)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EN62_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ESW62468.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
ErfK/YbiS/YcfS/YnhG family protein
scnpilot_p_inoc_scaffold_622_curated_27
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26597..26932)
DNA (336bp) protein (112aa)
UPF0060 membrane protein Rsw2DRAFT_2026 n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1U8_9RHOB
UPF0060 membrane protein Rsw2DRAFT_2026 {ECO:0000256|HAMAP-Rule:MF_00010}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein; K09771 hypothetical protein
scnpilot_p_inoc_scaffold_622_curated_28
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27012..27575)
DNA (564bp) protein (188aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI26365.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein id=3002093 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacterales bacterium Y4I genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ErfK/YbiS/YcfS/YnhG family protein
scnpilot_p_inoc_scaffold_622_curated_29
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28171..28899
DNA (729bp) protein (243aa)
27kDa outer membrane protein id=3002052 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
DSBA oxidoreductase
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_622_curated_30
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28930..29400)
DNA (471bp) protein (157aa)
RC180 id=3002027 bin=GWF1_Rhodobacteraceae_65_7 species=Ruegeria sp. PR1b genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
Displaying items 1-30 of 60 in total

View Taxonomy