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scnpilot_p_inoc_scaffold_706_curated

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_706_curated_1
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

140..814
DNA (675bp) protein (225aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. S9 RepID=UPI00025575B0
LysR family transcriptional regulator {ECO:0000313|EMBL:KFE48182.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_706_curated_2
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1443..2702)
DNA (1260bp) protein (420aa)
Putative glycerate kinase {ECO:0000313|EMBL:KGM89229.1}; EC=1.1.1.81 {ECO:0000313|EMBL:KGM89229.1};; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius mucosus DSM 17069.;"
hydroxypyruvate reductase (EC:1.1.1.81)
Probable hydroxypyruvate reductase oxidoreductase protein n=1 Tax=Roseovarius sp. 217 RepID=A3W5P7_9RHOB
scnpilot_p_inoc_scaffold_706_curated_3
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3145..4458)
DNA (1314bp) protein (438aa)
UPI0003D1A9AB related cluster n=1 Tax=unknown RepID=UPI0003D1A9AB
Contig26, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49650.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
TRAP dicarboxylate transporter subunit DctM
scnpilot_p_inoc_scaffold_706_curated_4
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4480..5055)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FPK1_PELBH
Uncharacterized protein {ECO:0000313|EMBL:EAU46212.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
TRAP transport system, small permease
scnpilot_p_inoc_scaffold_706_curated_5
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5052..6044)
DNA (993bp) protein (331aa)
UPI0003D1ADEA related cluster n=1 Tax=unknown RepID=UPI0003D1ADEA
Contig26, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49652.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
TRAP transport system substrate-binding protein
scnpilot_p_inoc_scaffold_706_curated_6
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6115..7836)
DNA (1722bp) protein (574aa)
hyuB; hydantoin utilization protein; K01474 N-methylhydantoinase B [EC:3.5.2.14]
UPI0003D1A3BC related cluster n=1 Tax=unknown RepID=UPI0003D1A3BC
N-methylhydantoinase B {ECO:0000313|EMBL:EAU48290.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
scnpilot_p_inoc_scaffold_706_curated_7
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7833..9887)
DNA (2055bp) protein (685aa)
hyuA; hydantoin utilization protein; K01473 N-methylhydantoinase A [EC:3.5.2.14]
UPI0003D1A8D4 related cluster n=1 Tax=unknown RepID=UPI0003D1A8D4
Contig26, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49654.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium PD-2.;"
scnpilot_p_inoc_scaffold_706_curated_8
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10034..10759
DNA (726bp) protein (242aa)
Putative transcriptional regulator protein, AsnC/GntR family n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FXB0_PELBH
Putative transcriptional regulator protein, AsnC/GntR family {ECO:0000313|EMBL:EAU48292.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601).;"
GntR family transcriptional regulator
scnpilot_p_inoc_scaffold_706_curated_9
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11102..11419)
DNA (318bp) protein (106aa)
Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y7Y4_PARAH
Trans-acting regulatory protein hvrA {ECO:0000313|EMBL:KFI24541.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
histone family protein nucleoid-structuring protein H-NS
scnpilot_p_inoc_scaffold_706_curated_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11728..12837)
DNA (1110bp) protein (370aa)
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
histidinol-phosphate aminotransferase id=2813727 bin=GWF1_Rhodobacteraceae_65_7 species=Pseudomonas sp. genus=unknown taxon_order=unknown taxon_class=unknown phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_11
Paracoccus yeei, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12851..14242)
DNA (1392bp) protein (464aa)
FAD linked oxidase-like protein id=2813723 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodospirillum rubrum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
D-lactate dehydrogenase {ECO:0000313|EMBL:AJW30101.1}; TaxID=147645 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus yeei.;"
FAD linked oxidase-like protein
scnpilot_p_inoc_scaffold_706_curated_12
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14342..15898)
DNA (1557bp) protein (519aa)
Peptide ABC transporter, periplasmic peptide-binding protein id=2813719 bin=GWF1_Rhodobacteraceae_65_7 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ABC-type dipeptide transport system, periplasmic component
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_13
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16090..17022
DNA (933bp) protein (311aa)
LysR substrate-binding protein id=2813715 bin=GWF1_Rhodobacteraceae_65_7 species=Mesorhizobium ciceri genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
LysR family transcriptional regulator
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_14
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17107..18147
DNA (1041bp) protein (347aa)
van; vanillate O-demethylase oxygenase; K03862 vanillate monooxygenase [EC:1.14.13.82]
Vanillate O-demethylase oxygenase-like protein id=2813712 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_15
Paracoccus yeei, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18151..19332
DNA (1182bp) protein (394aa)
phthalate 4,5-dioxygenase (EC:1.14.12.7)
Flavohemoprotein-like protein, oxidoreductase {ECO:0000313|EMBL:AJW30105.1}; TaxID=147645 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus yeei.;"
Oxidoreductase FAD/NAD(P)-binding domain-containing protein id=2514706 bin=GWF1_Rhodobacteraceae_65_7 species=Alcaligenes sp. HPC1271 genus=Alcaligenes taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
scnpilot_p_inoc_scaffold_706_curated_16
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19405..21021)
DNA (1617bp) protein (539aa)
ABC transporter related protein id=2514699 bin=GWF1_Rhodobacteraceae_65_7 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ABC transporter-like protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_17
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21025..21882)
DNA (858bp) protein (286aa)
Peptide ABC transporter, permease protein id=2514694 bin=GWF1_Rhodobacteraceae_65_7 species=Marinomonas sp. MED121 genus=Marinomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
dppC2; dipeptide transport system permease protein DppC
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_18
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21887..22855)
DNA (969bp) protein (323aa)
Uncharacterized protein id=2514691 bin=GWF1_Rhodobacteraceae_65_7 species=Amphimedon queenslandica genus=Amphimedon taxon_order=Haplosclerida taxon_class=Demospongiae phylum=Porifera tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_19
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23015..23698
DNA (684bp) protein (228aa)
Histidine utilization repressor id=2514685 bin=GWF1_Rhodobacteraceae_65_7 species=Roseovarius nubinhibens genus=Roseovarius taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hutC; histidine utilization repressor; K05836 GntR family transcriptional regulator, histidine utilization repressor
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_706_curated_20
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23887..24381)
DNA (495bp) protein (165aa)
AsnC family transcriptional regulator n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AIT2_BURGB
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:ACR31812.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
scnpilot_p_inoc_scaffold_706_curated_21
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24531..25571
DNA (1041bp) protein (347aa)
alcohol dehydrogenase; K00001 alcohol dehydrogenase [EC:1.1.1.1]
Alcohol dehydrogenase n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AIT1_BURGB
Alcohol dehydrogenase {ECO:0000313|EMBL:ACR31811.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
scnpilot_p_inoc_scaffold_706_curated_22
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25729..26313
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LVM8_RUEPO
hypothetical protein; K14160 protein ImuA
Uncharacterized protein {ECO:0000313|EMBL:AAV93980.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
scnpilot_p_inoc_scaffold_706_curated_23
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26255..27709
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SRD9_9RHOB
Nucleotidyltransferase {ECO:0000313|EMBL:KGJ04258.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
protein imuB-like protein
scnpilot_p_inoc_scaffold_706_curated_24
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27706..31011
DNA (3306bp) protein (1102aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
DNA polymerase III subunit alpha; K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=DNAE2_RUEPO rbh
scnpilot_p_inoc_scaffold_706_curated_25
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31355..31852
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00031D0419
Spore coat protein U {ECO:0000313|EMBL:KIX17588.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
spore coat protein U
scnpilot_p_inoc_scaffold_706_curated_26
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31867..32580
DNA (714bp) protein (238aa)
P pilus assembly protein, chaperone PapD n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IPI2_RHIML
Uncharacterized protein {ECO:0000313|EMBL:KIX17587.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
P pilus assembly protein, chaperone PapD
scnpilot_p_inoc_scaffold_706_curated_27
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32558..34948
DNA (2391bp) protein (797aa)
Fimbrial biogenesis outer membrane usher protein n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6EE69_SINMK
Uncharacterized protein {ECO:0000313|EMBL:KIX17586.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
fimbrial biogenesis outer membrane usher protein; K07347 outer membrane usher protein
scnpilot_p_inoc_scaffold_706_curated_28
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34945..35916
DNA (972bp) protein (324aa)
Spore coat protein U n=1 Tax=Nitratireductor indicus C115 RepID=K2NP20_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KIX17585.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
spore coat protein u
scnpilot_p_inoc_scaffold_706_curated_29
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36316..37152
DNA (837bp) protein (279aa)
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase id=2742646 bin=GWF1_Xanthomonadales_69_6 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_p_inoc_scaffold_706_curated_30
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37149..38402
DNA (1254bp) protein (418aa)
2-methylthioadenine synthase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EL60_9RHOB
2-methylthioadenine synthase {ECO:0000313|EMBL:ESW61841.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
MiaB-like tRNA modifying enzyme
Displaying items 1-30 of 39 in total

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