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scnpilot_p_inoc_scaffold_2083_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2083_curated_1
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..379
DNA (378bp) protein (126aa)
UPI0003D1C012 related cluster n=1 Tax=unknown RepID=UPI0003D1C012
Uncharacterized protein {ECO:0000313|EMBL:KJS44057.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2083_curated_2
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

372..677
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W8Q0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ23073.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2083_curated_3
Rhizobium sp. NT-26, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

798..2024
DNA (1227bp) protein (409aa)
Putative site-specific integrase IntC n=1 Tax=Rhizobium sp. RepID=L0NMX4_RHISP
Putative site-specific integrase IntC {ECO:0000313|EMBL:CCF22239.1}; TaxID=1125847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. NT-26.;"
putative integrase/recombinase
scnpilot_p_inoc_scaffold_2083_curated_4
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2018..2935
DNA (918bp) protein (306aa)
Putative integrase/recombinase n=1 Tax=Roseovarius sp. 217 RepID=A3W8Q2_9RHOB
Putative integrase/recombinase {ECO:0000313|EMBL:EAQ23075.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
xerC; site-specific tyrosine recombinase XerC
scnpilot_p_inoc_scaffold_2083_curated_5
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2932..3939
DNA (1008bp) protein (336aa)
Putative integrase/recombinase n=2 Tax=Roseovarius sp. 217 RepID=A3W8Q1_9RHOB
Putative integrase/recombinase {ECO:0000313|EMBL:EAQ23074.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. 217.;"
putative integrase/recombinase
scnpilot_p_inoc_scaffold_2083_curated_6
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4241..4453
DNA (213bp) protein (71aa)
UPI0003D1A7E9 related cluster n=1 Tax=unknown RepID=UPI0003D1A7E9
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_2083_curated_7
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4550..5155
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TFJ1_PARBH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADM10551.1}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC; 12087).;"
scnpilot_p_inoc_scaffold_2083_curated_8
Parvularcula bermudensis, Parvularcula, Parvularculales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5159..5557
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) RepID=E0TFJ2_PARBH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADM10552.1}; TaxID=314260 species="Bacteria; Proteobacteria; Alphaproteobacteria; Parvularculales; Parvularculaceae; Parvularcula.;" source="Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC; 12087).;"
scnpilot_p_inoc_scaffold_2083_curated_9
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5582..5713)
DNA (132bp) protein (44aa)
hypothetical protein, partial n=1 Tax=Oceanicola sp. S124 RepID=UPI000255A428
Uncharacterized protein {ECO:0000313|EMBL:KEO55238.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2083_curated_10
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5786..5878)
DNA (93bp) protein (31aa)
Uncharacterized protein {ECO:0000313|EMBL:KJS44051.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
scnpilot_p_inoc_scaffold_2083_curated_11
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6142..6840)
DNA (699bp) protein (233aa)
spermine/spermidine synthase (EC:2.5.1.16)
Spermine/spermidine synthase {ECO:0000313|EMBL:AGT07487.1}; EC=2.5.1.16 {ECO:0000313|EMBL:AGT07487.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
hypothetical protein n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F626
scnpilot_p_inoc_scaffold_2083_curated_12
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7101..7853)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DWW2_9RHOB
Membrane protein {ECO:0000313|EMBL:KJS45134.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
putative DUF81 family protein
scnpilot_p_inoc_scaffold_2083_curated_13
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7853..8356)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EFE9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDQ03202.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbus indolifex HEL-45.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2083_curated_14
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8897..9202
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00037B75FB
Wenxma_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ70204.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxinia.;" source="Wenxinia marina DSM 24838.;"
scnpilot_p_inoc_scaffold_2083_curated_15
unknown

Not on your lists

9277..9492
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2083_curated_16
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9680..10138
DNA (459bp) protein (153aa)
nucleoside diphosphate kinase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B5DF7F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV92302.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
scnpilot_p_inoc_scaffold_2083_curated_17
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10212..10634
DNA (423bp) protein (141aa)
GreA/GreB family elongation factor n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EFU3_9RHOB
Nucleoside diphosphate kinase {ECO:0000313|EMBL:KEJ98246.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
greA2; GreA/GreB family elongation factor; K06140 regulator of nucleoside diphosphate kinase
scnpilot_p_inoc_scaffold_2083_curated_18
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10865..11563)
DNA (699bp) protein (233aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Celeribacter baekdonensis B30 RepID=K2JCA6_9RHOB
5-formyltetrahydrofolate cyclo-ligase
scnpilot_p_inoc_scaffold_2083_curated_19
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11560..12987)
DNA (1428bp) protein (476aa)
2-nitropropane dioxygenase n=1 Tax=Celeribacter baekdonensis B30 RepID=K2JSX7_9RHOB
2-nitropropane dioxygenase {ECO:0000313|EMBL:EKE68220.1}; TaxID=1208323 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter baekdonensis B30.;"
2-nitropropane dioxygenase
scnpilot_p_inoc_scaffold_2083_curated_20
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12987..13322)
DNA (336bp) protein (112aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1208323 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter baekdonensis B30.;"
Alkylhydroperoxidase n=1 Tax=Celeribacter baekdonensis B30 RepID=K2J0B1_9RHOB
alkylhydroperoxidase
scnpilot_p_inoc_scaffold_2083_curated_21
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13315..13800)
DNA (486bp) protein (162aa)
Nitric oxide-dependent regulator DnrN or NorA n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RGF5_9RHOB
putative regulator of cell morphogenesis and NO signaling; K07322 regulator of cell morphogenesis and NO signaling
Tax=BJP_08E140C01_Roseovarius_63_250
scnpilot_p_inoc_scaffold_2083_curated_22
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13818..14267)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9R763_9RHOB
hypothetical protein; K06886 hemoglobin
Tax=BJP_08E140C01_Roseovarius_63_250
scnpilot_p_inoc_scaffold_2083_curated_23
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14345..14776
DNA (432bp) protein (144aa)
Putative transcriptional regulator n=1 Tax=Roseovarius sp. 217 RepID=A3W3T6_9RHOB
putative transcriptional regulator; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
Tax=BJP_IG2158_Rhodobacterales_69_12
scnpilot_p_inoc_scaffold_2083_curated_24
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14779..14964
DNA (186bp) protein (62aa)
FixN3 cytochrome c oxidase subunit 1 n=1 Tax=Roseovarius sp. 217 RepID=A3W3T7_9RHOB
Tax=BJP_08E140C01_Roseovarius_63_250
Displaying 24 items

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