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scnpilot_p_inoc_scaffold_241_curated

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Displaying items 1-30 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_241_curated_1
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(381..1457)
DNA (1077bp) protein (359aa)
Putative uncharacterized protein n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F5M3M1_RHOSH
hypothetical protein; K09799 hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_241_curated_2
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1644..2540)
DNA (897bp) protein (299aa)
Succinyl-CoA synthetase subunit alpha {ECO:0000313|EMBL:ESW61337.1}; EC=6.2.1.5 {ECO:0000313|EMBL:ESW61337.1};; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
sucD2; succinyl-CoA synthetase subunit alpha; K08692 malate-CoA ligase subunit alpha [EC:6.2.1.9]
Succinyl-CoA synthetase subunit alpha n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EMD9_9RHOB
scnpilot_p_inoc_scaffold_241_curated_3
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2552..3724)
DNA (1173bp) protein (391aa)
sucC2; malate--CoA ligase subunit beta; K14067 malate-CoA ligase subunit beta [EC:6.2.1.9]
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Sagittula stellata E-37 RepID=A3K628_9RHOB
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_241_curated_4
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3738..4676)
DNA (939bp) protein (313aa)
citE1; citrate lyase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
Citrate lyase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LSM5_DINSH
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_241_curated_5
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4701..5900)
DNA (1200bp) protein (400aa)
putative serine--glyoxylate aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Serine--glyoxylate aminotransferase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EE77_9RHOB
Serine--glyoxylate aminotransferase {ECO:0000313|EMBL:ESW59411.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
scnpilot_p_inoc_scaffold_241_curated_6
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6118..7446
DNA (1329bp) protein (443aa)
XRE family transcriptional regulator n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGZ1_9RHOB
XRE family transcriptional regulator {ECO:0000313|EMBL:ESW59412.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
hypothetical protein; K07110
scnpilot_p_inoc_scaffold_241_curated_7

Not on your lists

comp(7448..9535)
DNA (2088bp) protein (696aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AI23_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD61307.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_p_inoc_scaffold_241_curated_8
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9535..10404)
DNA (870bp) protein (290aa)
Flagellar motor protein n=5 Tax=Rhodobacter RepID=A3PP12_RHOS1
flagellar motor protein MotA; K02556 chemotaxis protein MotA
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_241_curated_9
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10464..11027)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX53_9RHOB
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_241_curated_10
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11024..11392)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX52_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW26577.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_241_curated_11
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11401..11880)
DNA (480bp) protein (160aa)
Flagellar basal body-associated protein FliL n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX51_9RHOB
Flagellar basal body-associated protein FliL {ECO:0000313|EMBL:EEW26576.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
flagellar basal body-associated protein FliL; K02415 flagellar FliL protein
scnpilot_p_inoc_scaffold_241_curated_12
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12001..13602
DNA (1602bp) protein (534aa)
Flagellar M-ring protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX50_9RHOB
fliF; flagellar MS-ring protein; K02409 flagellar M-ring protein FliF
Tax=CG_Rhodob_01
scnpilot_p_inoc_scaffold_241_curated_13
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13599..14186
DNA (588bp) protein (196aa)
ABC transporter, ATP-binding n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX49_9RHOB
ABC transporter, ATP-binding {ECO:0000313|EMBL:EEW26574.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein; K02411 flagellar assembly protein FliH
scnpilot_p_inoc_scaffold_241_curated_14
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14183..14452
DNA (270bp) protein (90aa)
Surface presentation of antigens (SPOA) protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX48_9RHOB
Surface presentation of antigens (SPOA) protein {ECO:0000313|EMBL:EEW26573.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
surface presentation of antigens (SPOA) protein; K02417 flagellar motor switch protein FliN/FliY
scnpilot_p_inoc_scaffold_241_curated_15
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14452..15168
DNA (717bp) protein (239aa)
Flagellar biosynthetic protein FliP n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX47_9RHOB
fliP; flagellar biosynthesis protein FliP; K02419 flagellar biosynthetic protein FliP
Tax=CG_Rhodob_01
scnpilot_p_inoc_scaffold_241_curated_16

Not on your lists

comp(15165..16346)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AZ85_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD61723.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hemolysin D; K12542 membrane fusion protein LapC
scnpilot_p_inoc_scaffold_241_curated_17
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16343..18547)
DNA (2205bp) protein (735aa)
ABC transporter ATP-binding/permease (EC:3.6.3.-); K12541 ATP-binding cassette, subfamily C, bacterial LapB
ABC transporter ATP-binding protein n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B5085A
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEO52267.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
scnpilot_p_inoc_scaffold_241_curated_18

Not on your lists

comp(18544..19893)
DNA (1350bp) protein (450aa)
transporter n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B5054E
Outer membrane efflux protein {ECO:0000313|EMBL:EKD59528.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
outer membrane efflux protein; K12543 outer membrane protein LapE
scnpilot_p_inoc_scaffold_241_curated_19
Sulfitobacter sp. CB2047, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19907..22474)
DNA (2568bp) protein (856aa)
Uncharacterized protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2K000_9RHOB
RTX family exoprotein {ECO:0000313|EMBL:KFC25637.1}; TaxID=1525218 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter sp. CB2047.;"
hypothetical protein
scnpilot_p_inoc_scaffold_241_curated_20

Not on your lists

comp(22416..23099)
DNA (684bp) protein (228aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2BH80_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD61474.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_p_inoc_scaffold_241_curated_21
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23332..24330)
DNA (999bp) protein (333aa)
glycerol-3-phosphate ABC transporter ATPase n=1 Tax=Paracoccus sp. N5 RepID=UPI00035E24E3
Glycerol-3-phosphate ABC transporter ATPase {ECO:0000313|EMBL:KGJ11431.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC transporter; K02023 multiple sugar transport system ATP-binding protein
scnpilot_p_inoc_scaffold_241_curated_22
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24342..25364)
DNA (1023bp) protein (341aa)
Oxidoreductase domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX00_9RHOB
Oxidoreductase {ECO:0000313|EMBL:KGJ06512.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
oxidoreductase domain-containing protein
scnpilot_p_inoc_scaffold_241_curated_23
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25361..26200)
DNA (840bp) protein (280aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4W3_PARDP
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein
Carbohydrate ABC transporter membrane protein 2, CUT1 family {ECO:0000313|EMBL:ABL70557.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_241_curated_24
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26211..27131)
DNA (921bp) protein (307aa)
ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EGU1_9RHOB
ABC transporter permease {ECO:0000313|EMBL:KGJ06510.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
scnpilot_p_inoc_scaffold_241_curated_25
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27214..28470)
DNA (1257bp) protein (419aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EE33_9RHOB
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW59361.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
scnpilot_p_inoc_scaffold_241_curated_26
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28513..29397)
DNA (885bp) protein (295aa)
murQ; N-acetylmuramic acid 6-phosphate etherase; K07106 N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
hypothetical protein n=1 Tax=Paracoccus sp. N5 RepID=UPI00036DAFBB
Acetylmuramic acid-6-phosphate etherase {ECO:0000313|EMBL:KGJ11435.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
scnpilot_p_inoc_scaffold_241_curated_27
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29552..30382
DNA (831bp) protein (277aa)
ATPase, BadF/BadG/BcrA/BcrD type n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4W7_PARDP
BadF/BadG/BcrA/BcrD type ATPase
ATPase, BadF/BadG/BcrA/BcrD type {ECO:0000313|EMBL:ABL70561.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_241_curated_28
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30382..31152
DNA (771bp) protein (257aa)
Transcriptional regulator, GntR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4W8_PARDP
UbiC transcription regulator-associated domain-containing protein; K03710 GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABL70562.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_241_curated_29
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31149..32174
DNA (1026bp) protein (342aa)
glutamine--fructose-6-phosphate transaminase (isomerizing); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
Glutamine--fructose-6-phosphate transaminase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4W9_PARDP
Aminotransferase {ECO:0000313|EMBL:KGJ11438.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
scnpilot_p_inoc_scaffold_241_curated_30
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32174..33301
DNA (1128bp) protein (376aa)
N-acetylglucosamine-6-phosphate deacetylase; K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4X0_PARDP
Displaying items 1-30 of 147 in total

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