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scnpilot_p_inoc_scaffold_1135_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1135_curated_1
unknown

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comp(1132..1278)
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1135_curated_2
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1322..2311)
DNA (990bp) protein (330aa)
Transcriptional regulator, AraC family with amidase-like domain n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BBS6_PARDP
AraC family transcriptional regulator
Transcriptional regulator, AraC family with amidase-like domain {ECO:0000313|EMBL:ABL72970.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_1135_curated_3
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2508..3311
DNA (804bp) protein (268aa)
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6DXB1_9RHOB
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:KGM89151.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius mucosus DSM 17069.;"
polar amino acid ABC transporter substrate-binding protein; K02030 polar amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1135_curated_4
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3368..4111
DNA (744bp) protein (248aa)
Polar amino acid uptake family ABC transporter, permease protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6DXB2_9RHOB
Amino acid ABC transporter membrane protein 1, PAAT family {ECO:0000313|EMBL:KGM89152.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius mucosus DSM 17069.;"
hypothetical protein; K02029 polar amino acid transport system permease protein
scnpilot_p_inoc_scaffold_1135_curated_5
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4113..5006
DNA (894bp) protein (298aa)
Polar amino acid uptake family ABC transporter, permease protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJ58_9RHOB
Polar amino acid uptake family ABC transporter, permease protein {ECO:0000313|EMBL:EAP77389.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
scnpilot_p_inoc_scaffold_1135_curated_6
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5016..5777
DNA (762bp) protein (254aa)
glnQ; glutamine ABC transporter ATP-binding protein; K02028 polar amino acid transport system ATP-binding protein [EC:3.6.3.21]
Glutamine ABC transporter, ATP-binding protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LP09_RUEPO
Glutamine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAV96279.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
scnpilot_p_inoc_scaffold_1135_curated_7
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5895..7280
DNA (1386bp) protein (462aa)
aspA; Aspartate ammonia-lyase; K01744 aspartate ammonia-lyase [EC:4.3.1.1]
Aspartate ammonia-lyase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QMU0_9BRAD
Aspartate ammonia-lyase {ECO:0000313|EMBL:KIC13402.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-Vp.;"
scnpilot_p_inoc_scaffold_1135_curated_8
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8135..9022)
DNA (888bp) protein (296aa)
Transporter n=1 Tax=Rhodobacter capsulatus B6 RepID=V8HF34_RHOCA
Transporter {ECO:0000313|EMBL:ETX26896.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1135_curated_9
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9053..9817)
DNA (765bp) protein (255aa)
iron siderophore/cobalamin ABC transporter ATP-binding protein (EC:3.6.3.-); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Iron siderophore/cobalamin ABC transporter ATP-binding protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2J1V4_9RHOB
Histidinol-phosphatase {ECO:0000313|EMBL:ETX26897.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
scnpilot_p_inoc_scaffold_1135_curated_10
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9814..10851)
DNA (1038bp) protein (346aa)
ABC transporter permease n=1 Tax=Rhodobacter capsulatus B6 RepID=V8HD10_RHOCA
ABC transporter permease {ECO:0000313|EMBL:ETX26898.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
iron siderophore/cobalamin ABC transporter permease; K02015 iron complex transport system permease protein
scnpilot_p_inoc_scaffold_1135_curated_11
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10851..11888)
DNA (1038bp) protein (346aa)
ABC transporter substrate-binding protein n=1 Tax=Rhodobacter capsulatus B6 RepID=V8HD76_RHOCA
iron siderophore/cobalamin ABC transporter periplasmic iron siderophore/cobalamin-binding protein
Iron siderophore/cobalamin ABC transporter, periplasmic iron siderophore/cobalamin-binding protein {ECO:0000313|EMBL:ADE85090.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
scnpilot_p_inoc_scaffold_1135_curated_12
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12270..12671
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B4P8_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL70492.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_1135_curated_13
unknown

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comp(13141..13377)
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1135_curated_14
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13545..15638)
DNA (2094bp) protein (698aa)
Putative uncharacterized protein n=2 Tax=uncultured bacterium RepID=C6KTJ3_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_1135_curated_15
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15804..17630)
DNA (1827bp) protein (609aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P4_9RHOB
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:EEW24992.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
virD2; putative protein VirD2
scnpilot_p_inoc_scaffold_1135_curated_16
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17623..18144)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P5_9RHOB
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_1135_curated_17
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18711..19436
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P6_9RHOB
virulence VirC1 protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_1135_curated_18
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19436..20452
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S1P7_9RHOB
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_1135_curated_19
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20535..20780
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K4J2_AGRVS
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_1135_curated_20
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20997..21266
DNA (270bp) protein (90aa)
SpoVT/AbrB domain protein id=2433513 bin=GWF1_Rhodobacteraceae_65_7 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
SpoVT/AbrB domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_1135_curated_21
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21278..21673
DNA (396bp) protein (132aa)
PilT protein domain protein id=2433515 bin=GWF1_Rhodobacteraceae_65_7 species=Paracoccus denitrificans genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
twitching motility protein PilT; K07062
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_1135_curated_22
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21862..22086)
DNA (225bp) protein (75aa)
Transcriptional regulator n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7GT28_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:ESZ02447.1}; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1135_curated_23
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22885..23880
DNA (996bp) protein (332aa)
integrase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F763
Phage integrase {ECO:0000313|EMBL:EKE67208.1}; TaxID=1208323 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter baekdonensis B30.;"
phage integrase
scnpilot_p_inoc_scaffold_1135_curated_24
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24014..24274
DNA (261bp) protein (87aa)
Transcriptional regulator, XRE family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SJK7_9RHOB
XRE family transcriptional regulator {ECO:0000313|EMBL:KEO55291.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
XRE family transcriptional regulator
scnpilot_p_inoc_scaffold_1135_curated_25
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24350..26071
DNA (1722bp) protein (574aa)
Putative permease subfamily, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QRG3_9RHOB
SulP family sulfate transporter {ECO:0000313|EMBL:KEO55290.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
sulfate transporter; K03321 sulfate permease, SulP family
scnpilot_p_inoc_scaffold_1135_curated_26
unknown

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26071..26313
DNA (243bp) protein (81aa)

This feature has no annotations

Displaying 26 items

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