ggKbase home page

scnpilot_p_inoc_scaffold_189_curated

Search features with annotation key words

Displaying items 1-30 of 157 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_189_curated_1
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(156..590)
DNA (435bp) protein (145aa)
Transcriptional regulator, MarR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B7X1_PARDP
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABL71615.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_189_curated_2
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

999..2297
DNA (1299bp) protein (433aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B6EAE0
urtB; urea ABC transporter urea binding protein UrtB; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_189_curated_3
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2350..4287
DNA (1938bp) protein (646aa)
Branched-chain amino acid ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EJF5_9RHOB
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:ESW61143.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_189_curated_4
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4390..5613
DNA (1224bp) protein (408aa)
Branched-chain amino acid ABC transporter permease n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7ELW9_9RHOB
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:ESW61142.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
urtC; urea transport permease UrtC; K01998 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_189_curated_5
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5610..6374
DNA (765bp) protein (255aa)
urtD; urea ABC transporter ATP-binding protein UrtD (EC:3.6.3.-); K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related id=2458322 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_189_curated_6
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6377..7072
DNA (696bp) protein (232aa)
ABC transporter related id=2458321 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sphaeroides genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_189_curated_7
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7073..7810)
DNA (738bp) protein (246aa)
Putative uncharacterized protein id=2937918 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
branched-chain amino acid aminotransferase
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_189_curated_8
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7807..8706)
DNA (900bp) protein (300aa)
class IV aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Aminotransferase class IV id=2938021 bin=GWF1_Rhodobacteraceae_65_7 species=Ketogulonicigenium vulgare genus=Ketogulonicigenium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_189_curated_9
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8838..9479
DNA (642bp) protein (214aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
msrA2; peptide methionine sulfoxide reductase MsrA (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EIG5_9RHOB
scnpilot_p_inoc_scaffold_189_curated_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9483..9791)
DNA (309bp) protein (103aa)
Antifreeze protein, type I n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HR95_9RHOB
antifreeze protein, type I
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_189_curated_11
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9892..11844)
DNA (1953bp) protein (651aa)
Oxidoreductase, FMN-binding protein n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MC85_PSEPS
Oxidoreductase, FMN-binding protein {ECO:0000313|EMBL:ELS25151.1}; TaxID=1149133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
putative oxidoreductase
scnpilot_p_inoc_scaffold_189_curated_12
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11974..13068)
DNA (1095bp) protein (365aa)
Flagellar P-ring protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX46_9RHOB
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_189_curated_13
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13065..14069)
DNA (1005bp) protein (335aa)
Flagellar hook-associated protein FlgL family protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX45_9RHOB
Flagellar hook-associated protein FlgL family protein {ECO:0000313|EMBL:EEW26570.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_189_curated_14
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14070..15497)
DNA (1428bp) protein (476aa)
Flagellar hook-associated protein FlgK n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX44_9RHOB
flgK; flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK
Tax=CG_Rhodob_01
scnpilot_p_inoc_scaffold_189_curated_15
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15504..16805)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX43_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EEW26568.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
flagellar hook protein FlgE
scnpilot_p_inoc_scaffold_189_curated_16
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16900..17712)
DNA (813bp) protein (271aa)
OmpA/MotB domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RX42_9RHOB
putative chemotaxis MotB protein; K02557 chemotaxis protein MotB
Tax=CG_Rhodob_01
scnpilot_p_inoc_scaffold_189_curated_17
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17801..18976)
DNA (1176bp) protein (392aa)
beta-ketoadipyl CoA thiolase (EC:2.3.1.16); K07823 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003601E79
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
scnpilot_p_inoc_scaffold_189_curated_18
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18973..20085)
DNA (1113bp) protein (371aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABL73146.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ABL73146.1};; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BCA2_PARDP
scnpilot_p_inoc_scaffold_189_curated_19
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20219..22504
DNA (2286bp) protein (762aa)
salicylyl-CoA 5-hydroxylase; K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40]
salicylyl-CoA 5-hydroxylase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F1E9
Salicylyl-CoA 5-hydroxylase {ECO:0000313|EMBL:KGJ09069.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
scnpilot_p_inoc_scaffold_189_curated_20
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22515..23252
DNA (738bp) protein (246aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BCA4_PARDP
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABL73148.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_189_curated_21
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23249..23710
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BCA5_PARDP
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABL73149.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_189_curated_22
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23707..24525
DNA (819bp) protein (273aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ABL73150.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABL73150.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
Enoyl-CoA hydratase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BCA6_PARDP
scnpilot_p_inoc_scaffold_189_curated_23
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24582..25718
DNA (1137bp) protein (379aa)
acyl-CoA dehydrogenase; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BCA7_PARDP
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABL73151.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_189_curated_24
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25733..26185
DNA (453bp) protein (151aa)
Cupin domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSA8_9RHIZ
Cupin {ECO:0000313|EMBL:KGJ09074.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
cupin
scnpilot_p_inoc_scaffold_189_curated_25

Not on your lists

26185..26595
DNA (411bp) protein (137aa)
Thioesterase superfamily protein n=1 Tax=uncultured bacterium RepID=K2AT78_9BACT
Thioesterase superfamily protein {ECO:0000313|EMBL:EKD59583.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
thioesterase superfamily protein
scnpilot_p_inoc_scaffold_189_curated_26
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26592..26993
DNA (402bp) protein (134aa)
endoribonuclease L-PSP n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F1EF
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:KGJ09076.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
scnpilot_p_inoc_scaffold_189_curated_27
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27052..28686
DNA (1635bp) protein (545aa)
AMP-dependent synthetase/ligase; K08295 2-aminobenzoate-CoA ligase [EC:6.2.1.32]
AMP-dependent synthetase and ligase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BCB0_PARDP
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABL73154.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_189_curated_28
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28702..29157)
DNA (456bp) protein (152aa)
Putative uncharacterized protein id=2468877 bin=GWF1_Rhodobacteraceae_65_7 species=Loktanella vestfoldensis genus=Loktanella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
DoxX family protein {ECO:0000313|EMBL:KIX17908.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
DoxX family protein; K15977 putative oxidoreductase
scnpilot_p_inoc_scaffold_189_curated_29
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29154..29927)
DNA (774bp) protein (258aa)
Putative uncharacterized protein id=2468876 bin=GWF1_Rhodobacteraceae_65_7 species=Loktanella vestfoldensis genus=Loktanella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_189_curated_30
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29911..30768)
DNA (858bp) protein (286aa)
UPF0276 protein SKA53_06462 id=2468875 bin=GWF1_Rhodobacteraceae_65_7 species=Loktanella vestfoldensis genus=Loktanella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
Displaying items 1-30 of 157 in total

View Taxonomy