ggKbase home page

scnpilot_p_inoc_scaffold_22_curated

Search features with annotation key words

Displaying items 1-30 of 513 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_22_curated_1
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..151)
DNA (150bp) protein (50aa)
Putative uncharacterized protein id=2459234 bin=GWF1_Rhodobacteraceae_65_7 species=Roseovarius sp. 217 genus=Roseovarius taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_2
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163..1161)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W4J5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KJS43316.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. BRH_c41.;"
hypothetical protein
scnpilot_p_inoc_scaffold_22_curated_3
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1186..1323
DNA (138bp) protein (46aa)
Transposase, IS4 family protein n=1 Tax=Citreicella sp. SE45 RepID=D0D5Q3_9RHOB
Transposase, IS4 family protein {ECO:0000313|EMBL:EEX16279.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
hypothetical protein
scnpilot_p_inoc_scaffold_22_curated_4
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1711..2424)
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E809E3
Transcriptional regulator protein {ECO:0000313|EMBL:EKF40014.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
bphR; transcriptional regulator protein
scnpilot_p_inoc_scaffold_22_curated_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2549..3142
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI00035D26BA
siaT; TRAP dicarboxylate transporter subunit DctQ
TRAP dicarboxylate transporter, DctQ subunit {ECO:0000313|EMBL:AFK56431.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_6
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3139..4410
DNA (1272bp) protein (424aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031E5EEE
TRAP transporter, DctM subunit subfamily
TRAP transporter, DctM subunit subfamily {ECO:0000313|EMBL:AFK56432.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_7
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4410..5345
DNA (936bp) protein (312aa)
Putative hydroxlacyl-CoA dehydrogenase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUJ5_TISMK
putative hydroxlacyl-CoA dehydrogenase
Putative hydroxlacyl-CoA dehydrogenase {ECO:0000313|EMBL:AFK56433.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5335..6303
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI00037ACD46
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:EKF40010.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
TRAP dicarboxylate transporter-DctP subunit
scnpilot_p_inoc_scaffold_22_curated_9
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6362..7222
DNA (861bp) protein (287aa)
Oxidoreductase protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUJ8_TISMK
oxidoreductase protein
Oxidoreductase protein {ECO:0000313|EMBL:AFK56436.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7219..8076
DNA (858bp) protein (286aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZV4_9RHIZ
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EYR84646.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bphC; glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_p_inoc_scaffold_22_curated_11
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8073..8789
DNA (717bp) protein (239aa)
Decarboxylase protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUK0_TISMK
decarboxylase
Decarboxylase protein {ECO:0000313|EMBL:AFK56438.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_12
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8782..10236
DNA (1455bp) protein (485aa)
2-hydroxymuconic semialdehyde dehydrogenase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUK1_TISMK
dmpC; 2-hydroxymuconic semialdehyde dehydrogenase
2-hydroxymuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:AFK56439.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_13
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10247..11029
DNA (783bp) protein (261aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TUK2_TISMK
hpcG; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
2-oxo-hepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:AFK56440.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11026..11832
DNA (807bp) protein (269aa)
alpha-dehydro-beta-deoxy-D-glucarate aldolase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000312B651
hpcH; HpcH/HpaI aldolase
HpcH/HpaI aldolase {ECO:0000313|EMBL:AFK56441.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_22_curated_15
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11832..12584
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037845B0
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS66387.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_p_inoc_scaffold_22_curated_16
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12619..13239
DNA (621bp) protein (207aa)
transcriptional regulator n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000376A23F
Transcriptional regulator {ECO:0000313|EMBL:EXG81571.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
tetr family transcriptional regulator
scnpilot_p_inoc_scaffold_22_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13494..14891
DNA (1398bp) protein (466aa)
Glycine cleavage T protein (Aminomethyl transferase) n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YFZ1_9RHIZ
Glycine cleavage system protein T {ECO:0000313|EMBL:KDR88095.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
Glycine cleavage T protein (Aminomethyl transferase)
scnpilot_p_inoc_scaffold_22_curated_18
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15108..16826)
DNA (1719bp) protein (573aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
Methionine--tRNA ligase id=2652688 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
scnpilot_p_inoc_scaffold_22_curated_19
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16960..17712)
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR id=2652683 bin=GWF1_Rhodobacteraceae_65_7 species=Paracoccus denitrificans genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
short-chain dehydrogenase/reductase SDR
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_20
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17792..19012)
DNA (1221bp) protein (407aa)
membrane protein n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B634F3
major facilitator transporter
Tax=BJP_IG2158_Rhodobacterales_69_12
scnpilot_p_inoc_scaffold_22_curated_21
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19171..20211
DNA (1041bp) protein (347aa)
Aldo/keto reductase n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F5M3I8_RHOSH
Aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ACM01617.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
scnpilot_p_inoc_scaffold_22_curated_22
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20270..20809
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S045_9RHOB
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_23
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20809..21312
DNA (504bp) protein (168aa)
Lipocalin family protein id=2798784 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
lipocalin family protein; K03098 outer membrane lipoprotein Blc
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_24
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21300..22163)
DNA (864bp) protein (288aa)
DNA binding protein, putative id=2798781 bin=GWF1_Rhodobacteraceae_65_7 species=Ruegeria conchae genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
XRE family transcriptional regulator
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_25
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22263..23162
DNA (900bp) protein (300aa)
Fatty acid desaturase id=2798778 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
putative fatty acid desaturase
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_26
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23159..23845)
DNA (687bp) protein (229aa)
NUDIX hydrolase id=2798774 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
NUDIX hydrolase
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_27
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23823..24212)
DNA (390bp) protein (130aa)
Putative uncharacterized protein id=2798770 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_28
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24449..25072
DNA (624bp) protein (208aa)
Putative uncharacterized protein id=2798766 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
calcium-binding EF-hand domain-containing protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_29
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25138..25737
DNA (600bp) protein (200aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=2798761 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=GWF1_Rhodobacteraceae_65_7_curated
scnpilot_p_inoc_scaffold_22_curated_30
unknown

Not on your lists

25734..26114
DNA (381bp) protein (127aa)

This feature has no annotations

Displaying items 1-30 of 513 in total

View Taxonomy