ggKbase home page

scnpilot_p_inoc_scaffold_130_curated

Search features with annotation key words

Displaying items 1-30 of 180 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_130_curated_1
GWE1_OD1_40_20, Parcubacteria, Bacteria

Not on your lists

comp(3..515)
DNA (513bp) protein (171aa)
type I restriction-modification system specificity determinant; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
restriction endonuclease subunit S n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037BE405
Type I restriction-modification system specificity determinant {ECO:0000313|EMBL:KKR51780.1}; TaxID=1618946 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWE1_40_20.;"
scnpilot_p_inoc_scaffold_130_curated_2
RifOxyC12_full_OD1_Magasanikbacteria_33_11_curated, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(512..2074)
DNA (1563bp) protein (521aa)
type I restriction-modification system subunit M (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72] id=5803700 bin=OD1_GWC2_34_28 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type I restriction-modification system subunit M (EC:2.1.1.72); K03427 type I restriction enzyme M protein [EC:2.1.1.72]
Tax=RifOxyC12_full_OD1_Magasanikbacteria_33_11_curated
scnpilot_p_inoc_scaffold_130_curated_3
unknown

Not on your lists

2107..2283
DNA (177bp) protein (59aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_130_curated_4
Flavobacterium sp. KMS, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2280..3242)
DNA (963bp) protein (321aa)
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6RWZ5_9FLAO
3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KIA93271.1}; TaxID=1566023 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. KMS.;"
phosphoglycerate dehydrogenase-like oxidoreductase
scnpilot_p_inoc_scaffold_130_curated_5
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3385..3795)
DNA (411bp) protein (137aa)
ketosteroid isomerase n=1 Tax=Burkholderia bryophila RepID=UPI000381B9E5
Uncharacterized protein {ECO:0000313|EMBL:KIF82109.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein; K06893
scnpilot_p_inoc_scaffold_130_curated_6
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3861..4835)
DNA (975bp) protein (325aa)
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0K658_9BACT
Alcohol dehydrogenase zinc-binding domain protein
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:CCG99611.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
scnpilot_p_inoc_scaffold_130_curated_7
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4895..5677)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DE3E07
Uncharacterized protein {ECO:0000313|EMBL:KFF29218.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
hypothetical protein
scnpilot_p_inoc_scaffold_130_curated_8
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5683..5970)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Kingella denitrificans ATCC 33394 RepID=F0F0T2_9NEIS
YCII-related {ECO:0000313|EMBL:AJH00867.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
scnpilot_p_inoc_scaffold_130_curated_9
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6026..7378)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00037E9A5E
hypothetical protein
Tax=GWE2_Bacteroidetes_32_14_curated
scnpilot_p_inoc_scaffold_130_curated_10
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(7523..7885)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I7S3_CALAS
hypothetical protein
Tax=RBG_16_Chloroflexi_54_18_curated
scnpilot_p_inoc_scaffold_130_curated_11
Elizabethkingia meningoseptica, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7935..8387)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0N758_ELIME
Uncharacterized protein {ECO:0000313|EMBL:EQB90689.1}; TaxID=1355388 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia meningoseptica 502.;"
hypothetical protein
scnpilot_p_inoc_scaffold_130_curated_12
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8399..9319)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Bacillus sp. FJAT-13831 RepID=UPI0002D376B1
Uncharacterized protein {ECO:0000313|EMBL:AIZ65227.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
alpha/beta hydrolase
scnpilot_p_inoc_scaffold_130_curated_13
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9396..10139)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037E4B40
Uncharacterized protein {ECO:0000313|EMBL:ESU18686.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
abortive infection protein; K07052
scnpilot_p_inoc_scaffold_130_curated_14
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10158..10922)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000370895F
LytTR family transcriptional regulator
LytTR family transcriptional regulator {ECO:0000313|EMBL:AKD56029.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
scnpilot_p_inoc_scaffold_130_curated_15
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10919..11971)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003679C6A
Uncharacterized protein {ECO:0000313|EMBL:AKD56176.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
signal transduction histidine kinase LytS
scnpilot_p_inoc_scaffold_130_curated_16
Flavobacterium columnare, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11964..13055)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000366C268
signal transduction histidine kinase LytS
Signal transduction histidine kinase LytS {ECO:0000313|EMBL:AEW85410.1}; TaxID=1041826 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87).;"
scnpilot_p_inoc_scaffold_130_curated_17
unknown

Not on your lists

13117..13212
DNA (96bp) protein (32aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_130_curated_18
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13205..13819)
DNA (615bp) protein (205aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niabella soli DSM 19437 RepID=H1NM69_9SPHI
LuxR family transcriptional regulator {ECO:0000313|EMBL:AHF14730.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
response regulator receiver
scnpilot_p_inoc_scaffold_130_curated_19
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13819..15759)
DNA (1941bp) protein (647aa)
ATP-binding region ATPase domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XX22_PEDHD
ATPase
ATP-binding region ATPase domain protein {ECO:0000313|EMBL:ACU04316.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_130_curated_20
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15942..17249
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6SAR3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KGO96124.1}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
hypothetical protein
scnpilot_p_inoc_scaffold_130_curated_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17346..17999
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NM59_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17278.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_p_inoc_scaffold_130_curated_22
BJP_08E140C01_Flavobacteriales_35_8, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18026..18838
DNA (813bp) protein (271aa)
peptidase M48, Ste24p id=16791869 bin=RBG_16_Aminicenantes_63_16_plus species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
peptidase M48, Ste24p
Tax=BJP_08E140C01_Flavobacteriales_35_8
scnpilot_p_inoc_scaffold_130_curated_23
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18854..22762
DNA (3909bp) protein (1303aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XX19_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU04313.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_130_curated_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22850..25003
DNA (2154bp) protein (718aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NM64_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17274.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_p_inoc_scaffold_130_curated_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25014..26228
DNA (1215bp) protein (405aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y2F2_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17282.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_p_inoc_scaffold_130_curated_26
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26297..27403
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NM66_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17272.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_p_inoc_scaffold_130_curated_27
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27418..28605
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NM66_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17272.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
scnpilot_p_inoc_scaffold_130_curated_28
unknown

Not on your lists

comp(29501..29953)
DNA (453bp) protein (151aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_130_curated_29
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29956..34623)
DNA (4668bp) protein (1556aa)
RHS repeat-associated core domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TA78_NIAKG
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AEW03416.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_130_curated_30
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34651..35166)
DNA (516bp) protein (172aa)
Glutathione peroxidase n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0G094_ECHVK
glutathione peroxidase
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
Displaying items 1-30 of 180 in total

View Taxonomy