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scnpilot_p_inoc_scaffold_34_curated

Search features with annotation key words

Displaying items 1-30 of 334 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_34_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(163..705)
DNA (543bp) protein (181aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCN2_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW03486.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

839..1822
DNA (984bp) protein (328aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCN3_NIAKG
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEW03487.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1899..5537
DNA (3639bp) protein (1213aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCN4_NIAKG
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEW03488.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5542..7134
DNA (1593bp) protein (531aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCN5_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03489.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7375..8799
DNA (1425bp) protein (475aa)
glycoside hydrolase family protein; K01206 alpha-L-fucosidase [EC:3.2.1.51]
Glycoside hydrolase family 29 (Alpha-L-fucosidase) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCN6_NIAKG
Glycoside hydrolase family 29 (Alpha-L-fucosidase) {ECO:0000313|EMBL:AEW03490.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_6
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8928..9788)
DNA (861bp) protein (287aa)
AraC family transcriptional regulator n=1 Tax=Flavobacterium sp. F52 RepID=J0RPV2_9FLAO
AraC family transcriptional regulator {ECO:0000313|EMBL:KFC59794.1}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_34_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10121..13207
DNA (3087bp) protein (1029aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCP2_NIAKG
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AEW03496.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13245..14858
DNA (1614bp) protein (538aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCP3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03497.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14998..18270
DNA (3273bp) protein (1091aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000382080C
ASPIC/UnbV domain protein {ECO:0000313|EMBL:ACU64128.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
ASPIC/UnbV domain-containing protein
scnpilot_p_inoc_scaffold_34_curated_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18274..19593
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364360C
Haloperoxidase {ECO:0000313|EMBL:KIC95434.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_p_inoc_scaffold_34_curated_11
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(19651..20898)
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Akkermansia sp. CAG:344 RepID=R7E5K9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KIF30386.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein; K07148 uncharacterized protein
scnpilot_p_inoc_scaffold_34_curated_12
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21146..22585
DNA (1440bp) protein (480aa)
ATPase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YFU8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ24587.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
ATPase; K06921
scnpilot_p_inoc_scaffold_34_curated_13
unknown

Not on your lists

23512..23772
DNA (261bp) protein (87aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_34_curated_14
RBG_16_Ignavibacteria_36_9_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(23755..27495)
DNA (3741bp) protein (1247aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI0002F577A4
hypothetical protein
Tax=RBG_16_Ignavibacteria_36_9_curated
scnpilot_p_inoc_scaffold_34_curated_15
unknown

Not on your lists

27791..28237
DNA (447bp) protein (149aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_34_curated_16
Flavobacteriales bacterium ALC-1, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28498..29628)
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B76E4F
Uncharacterized protein {ECO:0000313|EMBL:EDP72682.1}; TaxID=391603 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium ALC-1.;"
scnpilot_p_inoc_scaffold_34_curated_17
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29774..30781
DNA (1008bp) protein (336aa)
histidine kinase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B71B98
Uncharacterized protein {ECO:0000313|EMBL:AII52188.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
hypothetical protein
scnpilot_p_inoc_scaffold_34_curated_18
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30795..31478
DNA (684bp) protein (228aa)
chemotaxis protein CheY n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3EF23
Chemotaxis protein CheY {ECO:0000313|EMBL:KIA92635.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
LytTR family two component transcriptional regulator
scnpilot_p_inoc_scaffold_34_curated_19
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31943..33022
DNA (1080bp) protein (360aa)
ionic transporter y4hA n=1 Tax=Niabella aurantiaca RepID=UPI00037E9CE7
Ionic transporter y4hA {ECO:0000313|EMBL:KIC95752.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
sodium/calcium exchanger membrane protein; K07300 Ca2+:H+ antiporter
scnpilot_p_inoc_scaffold_34_curated_20
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

33542..35929
DNA (2388bp) protein (796aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NSQ9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AIM35962.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
hypothetical protein; K02004 putative ABC transport system permease protein
scnpilot_p_inoc_scaffold_34_curated_21
unknown

Not on your lists

35926..36087
DNA (162bp) protein (54aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_34_curated_22
Paenibacillus sp. JDR-2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36150..36911
DNA (762bp) protein (254aa)
Methyltransferase type 11 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSG5_9BACT
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ACT00769.1}; TaxID=324057 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. (strain JDR-2).;"
scnpilot_p_inoc_scaffold_34_curated_23
unknown

Not on your lists

comp(37026..37223)
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_34_curated_24
Odoribacter splanchnicus CAG:14, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37246..37809)
DNA (564bp) protein (188aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Odoribacter splanchnicus CAG:14 RepID=R6FDF7_9PORP
RNA polymerase sigma-24 subunit ECF subfamily {ECO:0000313|EMBL:CDB06966.1}; TaxID=1263090 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter splanchnicus CAG:14.;"
ECF subfamily RNA polymerase sigma-24 subunit
scnpilot_p_inoc_scaffold_34_curated_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38097..38357
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THN7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97465.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_34_curated_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38528..40321
DNA (1794bp) protein (598aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Elongation factor 4 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPR0_NIAKG
GTP-binding protein lepA; K03596 GTP-binding protein LepA
scnpilot_p_inoc_scaffold_34_curated_27
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(40561..43602)
DNA (3042bp) protein (1014aa)
cation transporter n=1 Tax=Spirosoma luteum RepID=UPI00036FA9AD
CzcA family heavy metal efflux pump; K07239 heavy-metal exporter, HME family
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:AEI49916.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_p_inoc_scaffold_34_curated_28
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(43745..44827)
DNA (1083bp) protein (361aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W3I4_DYAFD
RND family efflux transporter MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACT93961.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_34_curated_29
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(44848..46119)
DNA (1272bp) protein (424aa)
Outer membrane efflux protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W3I3_DYAFD
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ACT93960.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_34_curated_30
unknown

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comp(46196..46585)
DNA (390bp) protein (130aa)

This feature has no annotations

Displaying items 1-30 of 334 in total

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