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scnpilot_p_inoc_scaffold_1410_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1410_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..483
DNA (483bp) protein (161aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKU0_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67492.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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801..1601
DNA (801bp) protein (267aa)
Putative alpha/beta hydrolase {ECO:0000313|EMBL:BAK67491.1}; EC=3.7.1.- {ECO:0000313|EMBL:BAK67491.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative alpha/beta hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT9_9SPHN
putative alpha/beta hydrolase
scnpilot_p_inoc_scaffold_1410_curated_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1627..3132
DNA (1506bp) protein (502aa)
mmsA; methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:BAK67490.1}; EC=1.2.1.27 {ECO:0000313|EMBL:BAK67490.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT8_9SPHN
scnpilot_p_inoc_scaffold_1410_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3165..5327)
DNA (2163bp) protein (721aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67489.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5354..6160)
DNA (807bp) protein (269aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67488.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6157..8046)
DNA (1890bp) protein (630aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67487.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8036..10123)
DNA (2088bp) protein (696aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67486.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10113..10991)
DNA (879bp) protein (293aa)
Putative metal-dependent hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT3_9SPHN
putative metal-dependent hydrolase; K07046
Putative metal-dependent hydrolase {ECO:0000313|EMBL:BAK67485.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11020..11634)
DNA (615bp) protein (205aa)
Putative glutathione S-transferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT2_9SPHN
putative glutathione S-transferase
Putative glutathione S-transferase {ECO:0000313|EMBL:BAK67484.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11631..13199)
DNA (1569bp) protein (523aa)
Sodium/solute symporter family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT1_9SPHN
sodium/solute symporter family protein
Sodium/solute symporter family protein {ECO:0000313|EMBL:BAK67483.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13196..13411)
DNA (216bp) protein (72aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKT0_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK67482.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13569..14492
DNA (924bp) protein (308aa)
Putative LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS9_9SPHN
putative LysR family transcriptional regulator
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:BAK67481.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14647..15813
DNA (1167bp) protein (389aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:BAK67480.1}; EC=1.1.1.- {ECO:0000313|EMBL:BAK67480.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS8_9SPHN
alcohol dehydrogenase
scnpilot_p_inoc_scaffold_1410_curated_14
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15822..17024)
DNA (1203bp) protein (401aa)
pcaF; beta-ketoadipyl CoA thiolase; K07823 3-oxoadipyl-CoA thiolase [EC:2.3.1.174]
Beta-ketoadipyl CoA thiolase PcaF n=20 Tax=Pseudomonas aeruginosa RepID=E3A6P3_PSEAI
Beta-ketoadipyl-CoA thiolase {ECO:0000313|EMBL:ERV74209.1}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BL04.;"
scnpilot_p_inoc_scaffold_1410_curated_15
Sphingobium wenxiniae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17021..17734)
DNA (714bp) protein (238aa)
3-oxoacid CoA-transferase, A subunit (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
Succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HSA8_9SPHN
CatI {ECO:0000313|EMBL:AHZ46839.1}; TaxID=595605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium wenxiniae (strain DSM 21828 / JZ-1).;"
scnpilot_p_inoc_scaffold_1410_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17761..18417)
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67477.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18929..20017)
DNA (1089bp) protein (363aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMX4_9SPHN
two-component system sensor histidine kinase
scnpilot_p_inoc_scaffold_1410_curated_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20014..20715)
DNA (702bp) protein (234aa)
OmpR family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMX5_9SPHN
OmpR family two-component system response regulator
OmpR family two-component system response regulator {ECO:0000313|EMBL:BAK65423.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1410_curated_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20859..21113
DNA (255bp) protein (85aa)
Efflux pump periplasmic linker protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMX6_9SPHN
efflux pump periplasmic linker protein
Efflux pump periplasmic linker protein {ECO:0000313|EMBL:BAK65424.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 19 items

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