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scnpilot_p_inoc_scaffold_2369_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2369_curated_1
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..276
DNA (276bp) protein (92aa)
Protein translocase subunit SecD n=1 Tax=Sphingomonas sp. LH128 RepID=J8SN89_9SPHN
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
scnpilot_p_inoc_scaffold_2369_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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291..1268
DNA (978bp) protein (326aa)
preprotein translocase subunit SecF n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69A1A
Preprotein translocase subunit SecF {ECO:0000313|EMBL:AKH41929.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
protein translocase subunit secF; K03074 preprotein translocase subunit SecF
scnpilot_p_inoc_scaffold_2369_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1342..2535)
DNA (1194bp) protein (398aa)
Putative glycosyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYL3_9SPHN
Putative glycosyltransferase {ECO:0000313|EMBL:GAD47618.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
glycoside hydrolase family protein
scnpilot_p_inoc_scaffold_2369_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2532..3104)
DNA (573bp) protein (191aa)
Putative Xre family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHY4_9SPHN
Putative Xre family transcriptional regulator {ECO:0000313|EMBL:GAD47617.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2369_curated_5
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3202..3675
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBX6_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC62815.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_2369_curated_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3913..5640
DNA (1728bp) protein (576aa)
diguanylate cyclase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD7EF
Uncharacterized protein {ECO:0000313|EMBL:AHE57201.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2369_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5650..6225)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHJ3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47615.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2369_curated_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6222..8156)
DNA (1935bp) protein (645aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQG3_9SPHN
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD47614.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ABC transporter; K15738 ATP-binding cassette, subfamily F, uup
scnpilot_p_inoc_scaffold_2369_curated_9
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8199..8522
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9E8_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_2369_curated_10
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8643..9320
DNA (678bp) protein (226aa)
Two-component system, OmpR family, response regulator n=2 Tax=Novosphingobium RepID=F6ING8_9SPHN
two-component system OmpR family response regulator
Two-component system, OmpR family, response regulator {ECO:0000313|EMBL:EHJ62748.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
scnpilot_p_inoc_scaffold_2369_curated_11
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9391..10743
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L9_NOVAD
periplasmic sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_2369_curated_12
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10883..11182)
DNA (300bp) protein (100aa)
chorismate mutase (EC:5.4.99.5); K04092 chorismate mutase [EC:5.4.99.5]
Monofunctional chorismate mutase n=1 Tax=Novosphingobium sp. AP12 RepID=J3A1I8_9SPHN
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32197.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
scnpilot_p_inoc_scaffold_2369_curated_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11281..12291
DNA (1011bp) protein (337aa)
octaprenyl-diphosphate synthase (EC:2.5.1.-); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Putative octaprenyl-diphosphate synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYK4_9SPHN
Putative octaprenyl-diphosphate synthase {ECO:0000313|EMBL:GAD47608.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_2369_curated_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12378..13010
DNA (633bp) protein (211aa)
ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
ATP-dependent helicase HrpB n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8M4_NOVAD
ATP-dependent helicase hrpB {ECO:0000313|EMBL:GAO55528.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Displaying 14 items

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