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scnpilot_p_inoc_scaffold_1815_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1815_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1081)
DNA (1080bp) protein (360aa)
Carboxynorspermidine/carboxyspermidine decarboxylase {ECO:0000313|EMBL:AKH41806.1}; EC=4.1.1.96 {ECO:0000313|EMBL:AKH41806.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Orn/DAP/Arg decarboxylase 2; K13747 carboxynorspermidine decarboxylase [EC:4.1.1.-]
Carboxynorspermidine/carboxyspermidine decarboxylase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJQ0_9SPHN
scnpilot_p_inoc_scaffold_1815_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1091..1441)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A0Z1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48428.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
transmembrane signal peptide protein; K09922 hypothetical protein
scnpilot_p_inoc_scaffold_1815_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1522..2733)
DNA (1212bp) protein (404aa)
saccharopine dehydrogenase; K00290 saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7]
Putative saccharopine dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZST9_9SPHN
Putative saccharopine dehydrogenase {ECO:0000313|EMBL:GAD48429.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_1815_curated_4
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2796..3758
DNA (963bp) protein (321aa)
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Sphingomonas sp. LH128 RepID=J8W0N3_9SPHN
Threonine dehydratase {ECO:0000313|EMBL:EZP84635.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
scnpilot_p_inoc_scaffold_1815_curated_5
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3826..4257
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBA7_ERYLH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC63034.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
scnpilot_p_inoc_scaffold_1815_curated_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4271..4699
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EHV2_9SPHN
Membrane protein {ECO:0000313|EMBL:KHK91712.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1815_curated_7
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4781..5746)
DNA (966bp) protein (322aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis (strain HTCC2594).;"
Thioredoxin reductase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NBA9_ERYLH
scnpilot_p_inoc_scaffold_1815_curated_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6112..6684)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2HDH2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EZP83922.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1815_curated_9
unknown

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comp(6645..7040)
DNA (396bp) protein (132aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1815_curated_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7073..8059)
DNA (987bp) protein (329aa)
Putative aminodeoxychorismate lyase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y3G1_9SPHN
Putative aminodeoxychorismate lyase {ECO:0000313|EMBL:GAD47521.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
aminodeoxychorismate lyase; K07082 UPF0755 protein
scnpilot_p_inoc_scaffold_1815_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8063..9325)
DNA (1263bp) protein (421aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
3-oxoacyl-ACP synthase (EC:2.3.1.179); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHT7_9SPHN
scnpilot_p_inoc_scaffold_1815_curated_12
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9424..9660)
DNA (237bp) protein (79aa)
acyl carrier protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0839
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
acpP; acyl carrier protein; K02078 acyl carrier protein
scnpilot_p_inoc_scaffold_1815_curated_13
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10036..11154
DNA (1119bp) protein (373aa)
1,2-oxophytodienoate reductase n=1 Tax=Sphingomonas elodea RepID=UPI000263046C
Oxidoreductase {ECO:0000313|EMBL:EIZ80977.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
oxidoreductase
scnpilot_p_inoc_scaffold_1815_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11208..12107)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHA7_9SPHN
CHAD domain protein {ECO:0000313|EMBL:AKH42221.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1815_curated_15
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12142..13080)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0837
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_p_inoc_scaffold_1815_curated_16
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13117..14898)
DNA (1782bp) protein (594aa)
aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12]
Aspartate--tRNA ligase n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q0J3_9SPHN
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:EJL33612.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
scnpilot_p_inoc_scaffold_1815_curated_17
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15066..16271
DNA (1206bp) protein (402aa)
Ribonuclease D {ECO:0000313|EMBL:AKH41856.1}; EC=3.1.13.5 {ECO:0000313|EMBL:AKH41856.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5]
Ribonuclease D n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHD8_9SPHN
scnpilot_p_inoc_scaffold_1815_curated_18
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16283..16447
DNA (165bp) protein (55aa)
LysR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5A187
Hydrogen peroxide-inducible genes activator {ECO:0000313|EMBL:AKH41857.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
LysR family transcriptional regulator
Displaying 18 items

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