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scnpilot_p_inoc_scaffold_2287_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2287_curated_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1317)
DNA (1317bp) protein (439aa)
preprotein translocase subunit SecD n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD06FE
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD
scnpilot_p_inoc_scaffold_2287_curated_2
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1332..1652)
DNA (321bp) protein (107aa)
Preprotein translocase, YajC subunit n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9F6_9SPHN
hypothetical protein; K03210 preprotein translocase subunit YajC
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_2287_curated_3
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2024..2875)
DNA (852bp) protein (284aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB5F2
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:KKC26726.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
scnpilot_p_inoc_scaffold_2287_curated_4
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3075..3488
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSE1_SPHAL
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_2287_curated_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3740..4186
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QVT8_METTR
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66697.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_2287_curated_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4271..4708
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000315F54F
scnpilot_p_inoc_scaffold_2287_curated_7
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4818..5303
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E8E093
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KEO88405.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
acetyl-CoA carboxylase; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
scnpilot_p_inoc_scaffold_2287_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5319..6668
DNA (1350bp) protein (450aa)
Biotin carboxylase {ECO:0000313|EMBL:AKH41935.1}; EC=6.3.4.14 {ECO:0000313|EMBL:AKH41935.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.3.4.14); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase carboxyltransferase subunit alpha n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K5_NOVAD
scnpilot_p_inoc_scaffold_2287_curated_9
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6788..9082
DNA (2295bp) protein (765aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Sphingobium sp. AP49 RepID=J2D4E7_9SPHN
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJK84544.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
scnpilot_p_inoc_scaffold_2287_curated_10
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9098..9562)
DNA (465bp) protein (155aa)
AsnC family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002E595B9
ArsR family transcriptional regulator {ECO:0000313|EMBL:KEO88401.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_2287_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9779..11614
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHZ1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47627.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
two-component signal transduction histidine kinase
scnpilot_p_inoc_scaffold_2287_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11659..12654
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8N0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AKH41939.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2287_curated_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13024..13365
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H0M9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL28808.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
ycdJ; arylesterase
Displaying 13 items

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