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scnpilot_p_inoc_scaffold_2011_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2011_curated_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..778
DNA (777bp) protein (259aa)
amino acid transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6ACB2
putative aromatic acid transporter; K08195 MFS transporter, AAHS family, 4-hydroxybenzoate transporter
Putative aromatic acid transporter {ECO:0000313|EMBL:BAK67435.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_2011_curated_2
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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782..2440
DNA (1659bp) protein (553aa)
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
dehydratase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6A85E
Uncharacterized protein {ECO:0000313|EMBL:EQB33231.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
scnpilot_p_inoc_scaffold_2011_curated_3
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2640..3179
DNA (540bp) protein (180aa)
MarR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B421BE
Uncharacterized protein {ECO:0000313|EMBL:EQB33230.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
MarR family transcriptional regulator; K06075 MarR family transcriptional regulator, transcriptional regulator for hemolysin
scnpilot_p_inoc_scaffold_2011_curated_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3179..4468
DNA (1290bp) protein (430aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN5_9SPHN
hypothetical protein; K09123 hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67437.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_2011_curated_5
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4468..4908
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6995C
Uncharacterized protein {ECO:0000313|EMBL:EQB33228.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein; K09128 hypothetical protein
scnpilot_p_inoc_scaffold_2011_curated_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5439..7541
DNA (2103bp) protein (701aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J083_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK90673.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
fhuE; outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_2011_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7544..8104
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037CDB1A
Uncharacterized protein {ECO:0000313|EMBL:AJP74742.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
scnpilot_p_inoc_scaffold_2011_curated_8
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8089..9558
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037A9860
Uncharacterized protein {ECO:0000313|EMBL:AHE54715.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
PepSY-associated TM helix family protein
scnpilot_p_inoc_scaffold_2011_curated_9
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9703..10557)
DNA (855bp) protein (285aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT94_9GAMM
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:EEB80263.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
scnpilot_p_inoc_scaffold_2011_curated_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10717..12021
DNA (1305bp) protein (435aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN8_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK67440.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_2011_curated_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12091..12624
DNA (534bp) protein (178aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRB3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68479.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_2011_curated_12
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(12689..13162)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3B37A
Uncharacterized protein {ECO:0000313|EMBL:EIV92857.1}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2011_curated_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13456..14457
DNA (1002bp) protein (334aa)
LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICN3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55195.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
scnpilot_p_inoc_scaffold_2011_curated_14
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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14510..15079
DNA (570bp) protein (190aa)
Alpha/beta hydrolase fold-3 domain protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VHK7_CAUST
alpha/beta hydrolase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
Displaying 14 items

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