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scnpilot_p_inoc_scaffold_1706_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1706_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..380
DNA (378bp) protein (126aa)
Ribosome maturation factor RimP n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDB4_9SPHN
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09748 ribosome maturation factor RimP
scnpilot_p_inoc_scaffold_1706_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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380..2032
DNA (1653bp) protein (551aa)
Transcription elongation factor NusA n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W2H5_9SPHN
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A
scnpilot_p_inoc_scaffold_1706_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2013..2774
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZB7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47843.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K07742 hypothetical protein
scnpilot_p_inoc_scaffold_1706_curated_4
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2823..5552
DNA (2730bp) protein (910aa)
Translation initiation factor IF-2 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YIE6_9SPHN
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
scnpilot_p_inoc_scaffold_1706_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5680..6219
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B35198
Uncharacterized protein {ECO:0000313|EMBL:AKH41096.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1706_curated_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6219..6614
DNA (396bp) protein (132aa)
ribosome-binding factor A n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0755
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
ribosome-binding factor A; K02834 ribosome-binding factor A
scnpilot_p_inoc_scaffold_1706_curated_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6684..7262
DNA (579bp) protein (193aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
thymidine kinase (EC:2.7.1.21); K00857 thymidine kinase [EC:2.7.1.21]
Thymidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=KITH_NOVAD
scnpilot_p_inoc_scaffold_1706_curated_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7259..7810
DNA (552bp) protein (184aa)
GCN5 family acetyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B661B1
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:KHS42561.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
GCN5-like N-acetyltransferase
scnpilot_p_inoc_scaffold_1706_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7847..8533
DNA (687bp) protein (229aa)
Peptidase M50 family protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHZ9_9SPHN
Peptidase family M50 {ECO:0000313|EMBL:AKH41100.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
peptidase M50
scnpilot_p_inoc_scaffold_1706_curated_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8627..9049
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B387B5
Uncharacterized protein {ECO:0000313|EMBL:GAO56607.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1706_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9125..9631
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZB4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47838.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K09965 hypothetical protein
scnpilot_p_inoc_scaffold_1706_curated_12
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9628..10644
DNA (1017bp) protein (339aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JCG4_9SPHN
scnpilot_p_inoc_scaffold_1706_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10666..10935
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y480_9SPHN
30S ribosomal protein S15 {ECO:0000313|EMBL:AKH41102.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
scnpilot_p_inoc_scaffold_1706_curated_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11190..13505
DNA (2316bp) protein (772aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
polynucleotide phosphorylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3C6BA
scnpilot_p_inoc_scaffold_1706_curated_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13749..14423)
DNA (675bp) protein (225aa)
Putative methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2III6_9SPHN
Type 11 methyltransferase {ECO:0000313|EMBL:CDX59543.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative methyltransferase; K13623 S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase
scnpilot_p_inoc_scaffold_1706_curated_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14407..15645)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZA9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD47833.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K13622 S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase
scnpilot_p_inoc_scaffold_1706_curated_17
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15843..17957
DNA (2115bp) protein (705aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZY81_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL23624.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1706_curated_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17992..18690
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G207_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55199.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1706_curated_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18769..19641
DNA (873bp) protein (291aa)
Sorbitol dehydrogenase {ECO:0000313|EMBL:AKH41105.1}; EC=1.1.1.14 {ECO:0000313|EMBL:AKH41105.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G758_NOVAD
short-chain dehydrogenase/reductase SDR
scnpilot_p_inoc_scaffold_1706_curated_20
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19742..20689
DNA (948bp) protein (316aa)
Putative oxidoreductase SadH {ECO:0000313|EMBL:AKH41106.1}; EC=1.-.-.- {ECO:0000313|EMBL:AKH41106.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKV7_9SPHN
putative oxidoreductase
scnpilot_p_inoc_scaffold_1706_curated_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20715..21161
DNA (447bp) protein (149aa)
UPI0003D04EF3 related cluster n=1 Tax=unknown RepID=UPI0003D04EF3
Glyoxalase-like domain protein {ECO:0000313|EMBL:AKH41107.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K06996
Displaying 21 items

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