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scnpilot_p_inoc_scaffold_1706_curated_12

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 9628..10644

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.1
  • Coverage: 341.0
  • Bit_score: 458
  • Evalue 6.20e-126
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] similarity KEGG
DB: KEGG
  • Identity: 66.7
  • Coverage: 351.0
  • Bit_score: 431
  • Evalue 2.40e-118
tRNA pseudouridine synthase B n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JCG4_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 72.1
  • Coverage: 341.0
  • Bit_score: 458
  • Evalue 4.40e-126

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Taxonomy

Novosphingobium lindaniclasticum → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1017
ATGAGCGTCCATGGCTGGATCATTCTCGATAAGCCGGTTGGGCTTGGCTCCACTCAGGCTGTGGGGGCAGTGAAGCGTAACATGCGTGAGGCAGGCTATGGCAAGGTGAAGGTGGGCCATGGCGGCACGCTCGATCCGCTGGCCGAAGGCGTGCTGCCCATCGCGCTGGGCGAGGCGACCAAGCTGTGCGGGCGGATGCTGGATGCCAGCAAGATCTACGATTTCACGATCCGCTTCGGGGAACAGACCGACACGCTGGATGCCGAGGGACAGGTGATCGCCACGAGCGAGGCCCGGCCAACTCTGGCCCAGCTGGAGGCGGTGTTGCCGCGCTTCACCGGCCAGATCGATCAGGTGCCGCCTGCCTATTCGGCGCTCAAGGTGGATGGAAAGCGCGCCTATGACCTCGCCCGGGCGGGGGAAGAGGTTGAGCTGAAGGTGCGGGCGGTGACGGTTTATGCCCTCTCGATCCTCCCCGAACGGGGGAGGGGGACCATGCACAGCATGGTGGAGGGGCAGGTGCCGGATGGTGCTTCGCTGACCGGTTCAGGCCCGCCGCAGGTGCCCCTCCACCGTCCTTCGGACGGTCCCCCTCCCCGTGCCGGGGAGAATCTGCCCGAAATCACCCTGACCGCCCATGTCTCCAAGGGCACCTATATTCGCAGCCTCGCGCGTGATATAGCACTGGCGCTGGGCACGGTCGGCCATGTCACCATGCTGCGCCGGGTAAAGGCGGGGCCGTTCACGCTTGCTCAGGCGATTTCGCTGGACAAATTGAACGAAATCGGCAAGGGCGCGCGCCTTGAAGACGTAATCCTGCCGCTTGAGGCGGGGCTGGACGACATCCCGGCCCTCGATCTCTCTCCGGAGGCGGCAGTGGCGGTCCGACAGGGCCGTGTCCTCACCGGAATGCCCCAAGGTGACGGGTTGTACTGGGCAAGGGCGGGAGAAGTTCCCGTCGCTCTGGTCGAACTCGAAGCCGGGACGGCGAAGGTCGTCAGGGGTTTCAACCTTTAG
PROTEIN sequence
Length: 339
MSVHGWIILDKPVGLGSTQAVGAVKRNMREAGYGKVKVGHGGTLDPLAEGVLPIALGEATKLCGRMLDASKIYDFTIRFGEQTDTLDAEGQVIATSEARPTLAQLEAVLPRFTGQIDQVPPAYSALKVDGKRAYDLARAGEEVELKVRAVTVYALSILPERGRGTMHSMVEGQVPDGASLTGSGPPQVPLHRPSDGPPPRAGENLPEITLTAHVSKGTYIRSLARDIALALGTVGHVTMLRRVKAGPFTLAQAISLDKLNEIGKGARLEDVILPLEAGLDDIPALDLSPEAAVAVRQGRVLTGMPQGDGLYWARAGEVPVALVELEAGTAKVVRGFNL*