ggKbase home page

scnpilot_p_inoc_scaffold_1777_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1777_curated_1
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87..782)
DNA (696bp) protein (232aa)
chemotaxis protein CheY n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0B1C
Chemotaxis protein CheY {ECO:0000313|EMBL:KEO86590.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
DNA-binding response regulator CtrA; K13584 two-component system, cell cycle response regulator CtrA
scnpilot_p_inoc_scaffold_1777_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1029..2546)
DNA (1518bp) protein (506aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor
RNA polymerase sigma-54 factor n=1 Tax=Novosphingobium sp. AP12 RepID=J2GG87_9SPHN
RNA polymerase sigma-54 factor 1 {ECO:0000313|EMBL:AKH43630.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_1777_curated_3
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2581..3441)
DNA (861bp) protein (287aa)
ABC transporter-like protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBM9_NOVAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KHL24905.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
scnpilot_p_inoc_scaffold_1777_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3552..3929
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VR58_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43632.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1777_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4008..5354
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A105_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48443.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
microcin-processing peptidase 1; K03592 PmbA protein
scnpilot_p_inoc_scaffold_1777_curated_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5376..6728)
DNA (1353bp) protein (451aa)
MatE family transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQK4_9SPHN
MatE family transporter
MatE family transporter {ECO:0000313|EMBL:BAK65876.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_1777_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6820..7359)
DNA (540bp) protein (180aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
inorganic pyrophosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJR0_9SPHN
scnpilot_p_inoc_scaffold_1777_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7636..8745
DNA (1110bp) protein (370aa)
Alkanal monooxygenase alpha chain {ECO:0000313|EMBL:AKH43635.1}; EC=1.14.14.3 {ECO:0000313|EMBL:AKH43635.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQG6_9SPHN
hypothetical protein
scnpilot_p_inoc_scaffold_1777_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8806..10134
DNA (1329bp) protein (443aa)
Histidine--tRNA ligase {ECO:0000313|EMBL:AKH43637.1}; EC=6.1.1.21 {ECO:0000313|EMBL:AKH43637.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYH_NOVAD rbh
scnpilot_p_inoc_scaffold_1777_curated_10
unknown

Not on your lists

10221..10562
DNA (342bp) protein (114aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1777_curated_11
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10559..11629
DNA (1071bp) protein (357aa)
Peptide chain release factor 1 n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB12_9SPHN
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
peptide chain release factor RF-1; K02835 peptide chain release factor 1
scnpilot_p_inoc_scaffold_1777_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11726..12580
DNA (855bp) protein (285aa)
Release factor glutamine methyltransferase {ECO:0000313|EMBL:AKH43639.1}; EC=2.1.1.- {ECO:0000313|EMBL:AKH43639.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
HemK family modification methylase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-]
Release factor glutamine methyltransferase n=1 Tax=Novosphingobium sp. AP12 RepID=J2PAB3_9SPHN
scnpilot_p_inoc_scaffold_1777_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12788..13531
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I282_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43640.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1777_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13632..15215
DNA (1584bp) protein (528aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
apolipoprotein N-acyltransferase; K03820 apolipoprotein N-acyltransferase [EC:2.3.1.-]
Apolipoprotein N-acyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJQ6_9SPHN
scnpilot_p_inoc_scaffold_1777_curated_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15267..16475
DNA (1209bp) protein (403aa)
metK; S-adenosylmethionine synthase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6]
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
S-adenosylmethionine synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030DE3D1
Displaying 15 items

View Taxonomy