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scnpilot_p_inoc_scaffold_3729_curated

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_3729_curated_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..3209)
DNA (3207bp) protein (1069aa)
NAD-specific glutamate dehydrogenase {ECO:0000313|EMBL:GAO54483.1}; EC=1.4.1.2 {ECO:0000313|EMBL:GAO54483.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glutamate dehydrogenase (NAD) (EC:1.4.1.2); K15371 glutamate dehydrogenase [EC:1.4.1.2]
Glutamate dehydrogenase (NAD) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBW4_NOVAD
scnpilot_p_inoc_scaffold_3729_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3337..4320)
DNA (984bp) protein (328aa)
Alkanal monooxygenase alpha chain {ECO:0000313|EMBL:AKH43170.1}; EC=1.14.14.3 {ECO:0000313|EMBL:AKH43170.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Alkanal monooxygenase alpha chain n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N6W8_ERYLH
alkanal monooxygenase subunit alpha
scnpilot_p_inoc_scaffold_3729_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4332..5165)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6G8_9SPHN
Tetratricopeptide repeat protein {ECO:0000313|EMBL:AKH43169.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3729_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5162..5947)
DNA (786bp) protein (262aa)
Predicted hydrolase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P978_9SPHN
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:AKH43168.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hydrolase
scnpilot_p_inoc_scaffold_3729_curated_5
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5944..7911)
DNA (1968bp) protein (656aa)
Sensory box/GGDEF family protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EFY4_9SPHN
Sensory box/GGDEF family protein {ECO:0000313|EMBL:EHJ59673.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
sensory box/GGDEF family protein
scnpilot_p_inoc_scaffold_3729_curated_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8323..10320
DNA (1998bp) protein (666aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Threonine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYT_NOVAD rbh
scnpilot_p_inoc_scaffold_3729_curated_7
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10317..10775
DNA (459bp) protein (153aa)
yjaB; putative acetyltransferase; K03827 putative acetyltransferase [EC:2.3.1.-]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IEQ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB08149.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
scnpilot_p_inoc_scaffold_3729_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10885..12993
DNA (2109bp) protein (703aa)
Quinohemoprotein alcohol dehydrogenase ADH IIB {ECO:0000313|EMBL:AKH42190.1}; EC=1.1.9.1 {ECO:0000313|EMBL:AKH42190.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
quinohemoprotein alcohol dehydrogenase; K00114 alcohol dehydrogenase (cytochrome c) [EC:1.1.2.8]
Quinohemoprotein alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILH4_9SPHN
scnpilot_p_inoc_scaffold_3729_curated_9
unknown

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comp(12990..13118)
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_3729_curated_10
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13163..14149)
DNA (987bp) protein (329aa)
agmatine deiminase (EC:3.5.3.12); K10536 agmatine deiminase [EC:3.5.3.12]
Putative peptidylarginine deiminase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A1X8_9SPHN
Putative peptidylarginine deiminase {ECO:0000313|EMBL:GAD48758.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_3729_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14158..14970)
DNA (813bp) protein (271aa)
peptidase M28 n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0C9F
Peptidase family M28 {ECO:0000313|EMBL:AKH43153.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
Displaying 11 items

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