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scnpilot_p_inoc_scaffold_2054_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2054_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..644)
DNA (642bp) protein (214aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Holliday junction ATP-dependent DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZV03_9SPHN
scnpilot_p_inoc_scaffold_2054_curated_2
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1182..1607
DNA (426bp) protein (142aa)
endonuclease n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD09AC
excinuclease ABC subunit C; K07461 putative endonuclease
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_p_inoc_scaffold_2054_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1643..2251)
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLE3_9SPHN
scnpilot_p_inoc_scaffold_2054_curated_4
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2363..3427
DNA (1065bp) protein (355aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
aroC; chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
chorismate synthase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A5790A
scnpilot_p_inoc_scaffold_2054_curated_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3590..4156
DNA (567bp) protein (189aa)
alkyl hydroperoxide reductase; K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Alkyl hydroperoxide reductase subunit C n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKV0_9SPHN
Alkyl hydroperoxide reductase subunit C {ECO:0000313|EMBL:GAD49210.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_2054_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4260..5849
DNA (1590bp) protein (530aa)
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:AKH42669.1}; EC=1.8.1.- {ECO:0000313|EMBL:AKH42669.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
alkyl hydroperoxide reductase; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-]
Alkyl hydroperoxide reductase subunit F n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J7E9_9SPHN
scnpilot_p_inoc_scaffold_2054_curated_7
unknown

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comp(6075..6530)
DNA (456bp) protein (152aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2054_curated_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6632..7225)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A379_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49208.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2054_curated_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7236..8438)
DNA (1203bp) protein (401aa)
MltA protein; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
Membrane-bound lytic murein transglycosylase A n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLD7_9SPHN
Membrane-bound lytic murein transglycosylase A {ECO:0000313|EMBL:GAD49207.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_2054_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8445..9113)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFI8_9SPHN
Tim44-like domain protein {ECO:0000313|EMBL:AKH42673.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2054_curated_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9375..9896
DNA (522bp) protein (174aa)
Protein-export protein SecB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKU5_9SPHN
Protein-export protein SecB {ECO:0000313|EMBL:AKH42674.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
preprotein translocase subunit; K03071 preprotein translocase subunit SecB
scnpilot_p_inoc_scaffold_2054_curated_12
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9922..11526
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00036E55B6
virulence factor; K03980 virulence factor
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
scnpilot_p_inoc_scaffold_2054_curated_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11791..12813
DNA (1023bp) protein (341aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophan--tRNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A373_9SPHN
scnpilot_p_inoc_scaffold_2054_curated_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12954..13619
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLD4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49202.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2054_curated_15
unknown

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comp(13687..13986)
DNA (300bp) protein (100aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2054_curated_16
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14159..14626)
DNA (468bp) protein (156aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Novosphingobium sp. AP12 RepID=J2HES8_9SPHN
scnpilot_p_inoc_scaffold_2054_curated_17
unknown

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comp(14613..14699)
DNA (87bp) protein (29aa)

This feature has no annotations

Displaying 17 items

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