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scnpilot_p_inoc_scaffold_5432_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_5432_curated_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..205)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z3Y8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60688.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
spermidine synthase-like protein
scnpilot_p_inoc_scaffold_5432_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(215..856)
DNA (642bp) protein (214aa)
Probable GTP-binding protein EngB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A347_9SPHN
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ribosome biogenesis GTP-binding protein YsxC; K03978 GTP-binding protein
scnpilot_p_inoc_scaffold_5432_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(869..2662)
DNA (1794bp) protein (598aa)
Membrane protein insertase YidC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLB3_9SPHN
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
preprotein translocase subunit YidC; K03217 preprotein translocase subunit YidC
scnpilot_p_inoc_scaffold_5432_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2726..2935)
DNA (210bp) protein (70aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=YIDD_NOVAD
Putative membrane protein insertion efficiency factor {ECO:0000313|EMBL:AKH42701.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K08998 hypothetical protein
scnpilot_p_inoc_scaffold_5432_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2932..3306)
DNA (375bp) protein (125aa)
Ribonuclease P protein component {ECO:0000313|EMBL:AKH42702.1}; EC=3.1.26.5 {ECO:0000313|EMBL:AKH42702.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKS0_9SPHN
scnpilot_p_inoc_scaffold_5432_curated_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3459..3593)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL34_NOVAD
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34
scnpilot_p_inoc_scaffold_5432_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3695..4540)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUW0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49174.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
alpha/beta hydrolase
scnpilot_p_inoc_scaffold_5432_curated_8
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4735..6243
DNA (1509bp) protein (503aa)
Mg chelatase-related protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3A4W0_9SPHN
Mg chelatase-related protein {ECO:0000313|EMBL:EJL26059.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Mg chelatase-like protein; K07391 magnesium chelatase family protein
scnpilot_p_inoc_scaffold_5432_curated_9
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6255..6752
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NPA8_9CAUL
Acetyltransferase protein {ECO:0000313|EMBL:GAN54690.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
N-acetyltransferase GCN5
scnpilot_p_inoc_scaffold_5432_curated_10
unknown

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6856..7080
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying 10 items

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