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scnpilot_p_inoc_scaffold_2890_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2890_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..920)
DNA (918bp) protein (306aa)
Cystathionine beta-lyase MetC {ECO:0000313|EMBL:AKH42364.1}; EC=4.4.1.8 {ECO:0000313|EMBL:AKH42364.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cystathionine beta-lyase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IK86_9SPHN
scnpilot_p_inoc_scaffold_2890_curated_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(913..1770)
DNA (858bp) protein (286aa)
3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
UPI0003D026F6 related cluster n=1 Tax=unknown RepID=UPI0003D026F6
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
scnpilot_p_inoc_scaffold_2890_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1839..2576)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVV2_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAD49504.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_2890_curated_4
Gossypium raimondii, Gossypium, Malvales, rosids, Streptophyta, Viridiplantae

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2593..3129
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Nocardia asteroides NBRC 15531 RepID=U5EQA5_NOCAS
Uncharacterized protein {ECO:0000313|EMBL:KJB49786.1}; TaxID=29730 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.;" source="Gossypium raimondii (New World cotton).;"
scnpilot_p_inoc_scaffold_2890_curated_5
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3135..3656
DNA (522bp) protein (174aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
7-cyano-7-deazaguanine reductase; K09457 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I5T3_9SPHN
scnpilot_p_inoc_scaffold_2890_curated_6
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3663..4106)
DNA (444bp) protein (148aa)
thioredoxin 2 (EC:1.8.1.8); K03672 thioredoxin 2 [EC:1.8.1.8]
Thioredoxin n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZPI1_9SPHN
ScaffoldA10, whole genome shotgun sequence {ECO:0000313|EMBL:KIS29800.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
scnpilot_p_inoc_scaffold_2890_curated_7
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4240..4935)
DNA (696bp) protein (232aa)
Membrane protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GTE5_9SPHN
Membrane protein {ECO:0000313|EMBL:KER37648.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2890_curated_8
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5042..6403)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z436_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI97368.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_p_inoc_scaffold_2890_curated_9
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6396..6824)
DNA (429bp) protein (143aa)
Membrane protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HX94_9SPHN
Membrane protein {ECO:0000313|EMBL:EQB03945.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2890_curated_10
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6821..7720)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WCI0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK80340.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2890_curated_11
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7901..9826)
DNA (1926bp) protein (642aa)
Amidohydrolase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GVI5_9SPHN
Amidohydrolase {ECO:0000313|EMBL:KER37644.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
putative hydrolase; K07047
scnpilot_p_inoc_scaffold_2890_curated_12
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9823..10071)
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=D4Z432_SPHJU
hypothetical protein
XapX domain-containing protein {ECO:0000313|EMBL:EPR17561.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
scnpilot_p_inoc_scaffold_2890_curated_13
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10217..10873)
DNA (657bp) protein (219aa)
Putative alpha/beta hydrolase n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z430_SPHJU
putative alpha/beta hydrolase
Putative alpha/beta hydrolase {ECO:0000313|EMBL:BAI97362.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_p_inoc_scaffold_2890_curated_14
unknown

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comp(10942..11082)
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 14 items

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