ggKbase home page

scnpilot_p_inoc_scaffold_2453_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2453_curated_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(308..1285)
DNA (978bp) protein (326aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036EB358
TonB-like protein {ECO:0000313|EMBL:EGD60677.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TonB-like protein
scnpilot_p_inoc_scaffold_2453_curated_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1363..2655
DNA (1293bp) protein (431aa)
Monooxygenase, FAD-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G648_NOVAD
hypothetical protein
Monooxygenase, FAD-binding protein {ECO:0000313|EMBL:ABD26675.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_2453_curated_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2652..3107
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G649_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS49118.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2453_curated_4
unknown

Not on your lists

comp(3287..3496)
DNA (210bp) protein (70aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2453_curated_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3543..4349)
DNA (807bp) protein (269aa)
type IV secretion protein VirJ n=1 Tax=Sphingomonas wittichii RepID=UPI0002DA4D17
Type IV secretory pathway VirJ component-like protein
Type IV secretory pathway VirJ component-like protein {ECO:0000313|EMBL:ABQ71138.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_2453_curated_6
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4346..5848)
DNA (1503bp) protein (501aa)
Virulence factor family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFS1_SPHWW
virulence factor family protein
Virulence factor family protein {ECO:0000313|EMBL:ABQ71137.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_2453_curated_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5949..7319)
DNA (1371bp) protein (457aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFS0_SPHWW
integral membrane sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_2453_curated_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7322..8011)
DNA (690bp) protein (230aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFR9_SPHWW
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABQ71135.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_2453_curated_9
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8008..8424)
DNA (417bp) protein (139aa)
PDZ/DHR/GLGF domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFR8_SPHWW
PDZ/DHR/GLGF domain-containing protein
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:ABQ71134.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_2453_curated_10
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8841..9317
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFR5_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71131.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_2453_curated_11
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9342..11993
DNA (2652bp) protein (884aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFR4_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:ABQ71130.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_2453_curated_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12000..12689)
DNA (690bp) protein (230aa)
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase {ECO:0000313|EMBL:BAK67551.1}; EC=1.14.11.- {ECO:0000313|EMBL:BAK67551.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKZ9_9SPHN
tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase
Displaying 12 items

View Taxonomy