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scnpilot_p_inoc_scaffold_2595_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2595_curated_1
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1866)
DNA (1866bp) protein (622aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B70E4B
scnpilot_p_inoc_scaffold_2595_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1971..2471)
DNA (501bp) protein (167aa)
Putative Fur family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJX4_9SPHN
Putative Fur family transcriptional regulator {ECO:0000313|EMBL:GAD48775.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
Fur family transcriptional regulator, zinc uptake regulator; K09823 Fur family transcriptional regulator, zinc uptake regulator
scnpilot_p_inoc_scaffold_2595_curated_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2489..3172)
DNA (684bp) protein (228aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401, ECO:0000256|SAAS:SAAS00005567};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
methionine sulfoxide reductase A (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003187828
scnpilot_p_inoc_scaffold_2595_curated_4
unknown

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comp(3172..3276)
DNA (105bp) protein (35aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2595_curated_5
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3473..5104)
DNA (1632bp) protein (544aa)
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
Bifunctional purine biosynthesis protein PurH n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFP8_9SPHN
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
scnpilot_p_inoc_scaffold_2595_curated_6
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5101..6981)
DNA (1881bp) protein (627aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A203_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48778.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
heparinase II/III-like
scnpilot_p_inoc_scaffold_2595_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6981..7643)
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:AKH43212.1}; EC=5.1.3.1 {ECO:0000313|EMBL:AKH43212.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1]
Ribulose-phosphate 3-epimerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5T9_9SPHN
scnpilot_p_inoc_scaffold_2595_curated_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7813..8403
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC71_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS47837.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2595_curated_9
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8764..9687
DNA (924bp) protein (308aa)
hippurate hydrolase (EC:3.5.1.32); K01451 hippurate hydrolase [EC:3.5.1.32]
Hippurate hydrolase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VJK7_9SPHN
Hippurate hydrolase {ECO:0000313|EMBL:EJU12952.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
scnpilot_p_inoc_scaffold_2595_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9693..10334
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NUW0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41609.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
scnpilot_p_inoc_scaffold_2595_curated_11
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10354..11226)
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMY8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU11980.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2595_curated_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11378..12139
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NM28_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28595.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
GntR family transcriptional regulator
Displaying 12 items

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