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scnpilot_p_inoc_scaffold_1641_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1641_curated_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..720)
DNA (720bp) protein (240aa)
Quinone oxidoreductase {ECO:0000313|EMBL:GAO54287.1}; EC=1.6.5.5 {ECO:0000313|EMBL:GAO54287.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Alcohol dehydrogenase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CB05_9SPHN
alcohol dehydrogenase
scnpilot_p_inoc_scaffold_1641_curated_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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945..3317
DNA (2373bp) protein (791aa)
ATP-dependent Clp protease ATP-binding subunit ClpA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2H5_9SPHN
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:GAD48958.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ATP-dependent Clp protease ATP-binding subunit ClpA; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
scnpilot_p_inoc_scaffold_1641_curated_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3421..3840
DNA (420bp) protein (140aa)
Globin n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5X0_9SPHN
Globin {ECO:0000313|EMBL:KHS47871.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
globin; K06886 hemoglobin
scnpilot_p_inoc_scaffold_1641_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3842..4120)
DNA (279bp) protein (93aa)
UPF0235 protein NT2_04_03690 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6Z7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43356.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein; K09131 hypothetical protein
scnpilot_p_inoc_scaffold_1641_curated_5
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4107..4670)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002F805DF
transferase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
scnpilot_p_inoc_scaffold_1641_curated_6
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4667..5254)
DNA (588bp) protein (196aa)
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFC9_9SPHN
N-acetyltransferase GCN5
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1641_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5220..6218)
DNA (999bp) protein (333aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
porphobilinogen synthase (EC:4.2.1.24); K01698 porphobilinogen synthase [EC:4.2.1.24]
Delta-aminolevulinic acid dehydratase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2H1_9SPHN
scnpilot_p_inoc_scaffold_1641_curated_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6266..7954)
DNA (1689bp) protein (563aa)
Murein DD-endopeptidase MepM {ECO:0000313|EMBL:AKH43352.1}; EC=3.4.24.- {ECO:0000313|EMBL:AKH43352.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Peptidase M23 family protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKV6_9SPHN
membrane protein
scnpilot_p_inoc_scaffold_1641_curated_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8101..10800
DNA (2700bp) protein (900aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6Z3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48951.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ATP-dependent helicase
scnpilot_p_inoc_scaffold_1641_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11124..11462
DNA (339bp) protein (113aa)
Ferredoxin II n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9N2_9SPHN
Ferredoxin-2 {ECO:0000313|EMBL:AKH43350.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
4Fe-4S ferredoxin; K05524 ferredoxin
scnpilot_p_inoc_scaffold_1641_curated_11
unknown

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11616..11852
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1641_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12179..12712
DNA (534bp) protein (178aa)
Putative CarD family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2G7_9SPHN
Putative CarD family transcriptional regulator {ECO:0000313|EMBL:GAD48948.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
carD family transcriptional regulator; K07736 CarD family transcriptional regulator
scnpilot_p_inoc_scaffold_1641_curated_13
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12848..13177
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225DE4D
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_1641_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13196..14137)
DNA (942bp) protein (314aa)
Threonylcarbamoyl-AMP synthase {ECO:0000313|EMBL:AKH43346.1}; EC=2.7.7.87 {ECO:0000313|EMBL:AKH43346.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Translation factor SUA5 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VB64_9SPHN
translation factor SUA5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
scnpilot_p_inoc_scaffold_1641_curated_15
Erythrobacter sp. NAP1, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14343..16082
DNA (1740bp) protein (580aa)
Acyl-CoA dehydrogenase family protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WG08_9SPHN
Acyl-CoA dehydrogenase family protein {ECO:0000313|EMBL:EAQ28504.1}; TaxID=237727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. NAP1.;"
acyl-CoA dehydrogenase
scnpilot_p_inoc_scaffold_1641_curated_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16094..16921
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK81_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48945.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K06923
scnpilot_p_inoc_scaffold_1641_curated_17
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16997..18052)
DNA (1056bp) protein (352aa)
L-sorbosone dehydrogenase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N6I2_ERYLH
Membrane bound L-sorbosone dehydrogenase {ECO:0000313|EMBL:AKH43344.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
L-sorbosone dehydrogenase
Displaying 17 items

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