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scnpilot_p_inoc_scaffold_2136_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2136_curated_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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206..1726
DNA (1521bp) protein (507aa)
fumarate hydratase, class I (EC:4.2.1.2); K01676 fumarate hydratase, class I [EC:4.2.1.2]
Putative fumarate hydratase class I n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKS9_9SPHN
Putative fumarate hydratase class I {ECO:0000313|EMBL:GAD48912.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
scnpilot_p_inoc_scaffold_2136_curated_2
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1854..3131
DNA (1278bp) protein (426aa)
Sensor histidine kinase YehU {ECO:0000313|EMBL:AKH43312.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AKH43312.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Sensor histidine kinase n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9J1_9SPHN
sensor histidine kinase
scnpilot_p_inoc_scaffold_2136_curated_3
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3124..3861
DNA (738bp) protein (246aa)
Two-component response regulator n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9J0_9SPHN
Two-component response regulator {ECO:0000313|EMBL:EDL49784.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
two-component response regulator; K08083 two-component system, LytT family, response regulator AlgR
scnpilot_p_inoc_scaffold_2136_curated_4
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3966..4259)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WDW4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ78406.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2136_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4461..4727
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6V4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43309.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2136_curated_6
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4741..5592
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9I7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL25122.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein; K07029
scnpilot_p_inoc_scaffold_2136_curated_7
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5589..6332
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU69_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48909.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
metallophosphoesterase
scnpilot_p_inoc_scaffold_2136_curated_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6420..6614
DNA (195bp) protein (65aa)
Uncharacterized protein n=2 Tax=Ruegeria RepID=R0F7C9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:GAO53811.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2136_curated_9
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6678..7217)
DNA (540bp) protein (180aa)
30S ribosomal protein S9 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IJW7_9SPHN
30S ribosomal protein S9 {ECO:0000313|EMBL:AKH43304.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
scnpilot_p_inoc_scaffold_2136_curated_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7217..7696)
DNA (480bp) protein (160aa)
50S ribosomal protein L13 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B483D7
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
scnpilot_p_inoc_scaffold_2136_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7847..8176)
DNA (330bp) protein (110aa)
Putative CutA homolog n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y6V1_9SPHN
Putative CutA homolog {ECO:0000313|EMBL:GAD48906.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
periplasmic divalent cation tolerance protein; K03926 periplasmic divalent cation tolerance protein
scnpilot_p_inoc_scaffold_2136_curated_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8184..9248)
DNA (1065bp) protein (355aa)
Heme A synthase {ECO:0000313|EMBL:AKH43301.1}; EC=1.3.-.- {ECO:0000313|EMBL:AKH43301.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Heme A synthase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YK56_9SPHN
cytochrome c oxidase assembly protein; K02259 cytochrome c oxidase assembly protein subunit 15
scnpilot_p_inoc_scaffold_2136_curated_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9433..9756
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9I0_9SPHN
MerC mercury resistance protein {ECO:0000313|EMBL:AKH43300.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2136_curated_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9863..10843
DNA (981bp) protein (327aa)
Thiazole synthase {ECO:0000313|EMBL:AKH43299.1}; EC=2.8.1.10 {ECO:0000313|EMBL:AKH43299.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
thiazole synthase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E15C
bifunctional sulfur carrier protein/thiazole synthase; K03149 thiamine biosynthesis ThiG
scnpilot_p_inoc_scaffold_2136_curated_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10908..11486
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IKD7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK89734.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2136_curated_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11554..12090
DNA (537bp) protein (179aa)
UPF0114 protein SLG_16010 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISB6_9SPHN
hypothetical protein
UPF0114 protein SLG_16010 {ECO:0000256|HAMAP-Rule:MF_00143}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_2136_curated_17
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12119..13945)
DNA (1827bp) protein (609aa)
AMP-dependent synthetase/ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain-fatty-acid-CoA ligase, putative n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFV3_9SPHN
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_2136_curated_18
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14040..14204)
DNA (165bp) protein (55aa)
Gamma-glutamyltransferase 1 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6Q7_9SPHN
Gamma-glutamyltransferase 1 {ECO:0000313|EMBL:EGD59717.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Displaying 18 items

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