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scnpilot_p_inoc_scaffold_1808_curated

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1808_curated_1
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1692
DNA (1692bp) protein (564aa)
Outer membrane protein assembly factor BamA n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEX6_9SPHN
Outer membrane protein assembly factor BamA {ECO:0000313|EMBL:AKH41883.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
surface antigen (D15); K07277 outer membrane protein
scnpilot_p_inoc_scaffold_1808_curated_2
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2033..2908
DNA (876bp) protein (292aa)
OmpA/MotB n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPJ2_SPHAL
OmpA/MotB protein
OmpA/MotB {ECO:0000313|EMBL:ABF54430.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
scnpilot_p_inoc_scaffold_1808_curated_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3022..6162)
DNA (3141bp) protein (1047aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ90_9SPHN
Vitamin B12 transporter BtuB {ECO:0000313|EMBL:AKH41524.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein
scnpilot_p_inoc_scaffold_1808_curated_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6420..7970)
DNA (1551bp) protein (517aa)
4-cresol dehydrogenase (hydroxylating) (EC:1.17.99.1)
4-cresol dehydrogenase (Hydroxylating) {ECO:0000313|EMBL:ABP64339.1}; EC=1.17.99.1 {ECO:0000313|EMBL:ABP64339.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
4-cresol dehydrogenase (Hydroxylating) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEH8_NOVAD
scnpilot_p_inoc_scaffold_1808_curated_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7987..8367)
DNA (381bp) protein (127aa)
4-cresol dehydrogenase n=1 Tax=Pseudomonas thermotolerans RepID=UPI00035FD6AF
PchC {ECO:0000313|EMBL:ACS34982.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens.;"
putative p-cresol methylhydroxylase subunit
scnpilot_p_inoc_scaffold_1808_curated_6
unknown

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comp(8364..8744)
DNA (381bp) protein (127aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1808_curated_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8976..10679
DNA (1704bp) protein (568aa)
Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEH5_NOVAD
sigma-54 dependent trancsriptional regulator
Sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABP64336.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_1808_curated_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11580..12497)
DNA (918bp) protein (306aa)
Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7T4_NOVAD
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO53401.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_1808_curated_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12615..13778
DNA (1164bp) protein (388aa)
Cytochrome P450 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEY8_9SPHN
cytochrome P450
Cytochrome P450 {ECO:0000313|EMBL:CCA90863.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_1808_curated_10
unknown

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13945..15624
DNA (1680bp) protein (560aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1808_curated_11

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15756..16154
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W6F6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AGU10363.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
Displaying 11 items

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