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scnpilot_p_inoc_scaffold_2700_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2700_curated_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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113..1609
DNA (1497bp) protein (499aa)
capsule biosynthesis protein CapK n=1 Tax=Sphingomonas elodea RepID=UPI0002631ABF
Capsule biosynthesis protein CapK {ECO:0000313|EMBL:AJP73774.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
polysaccharide biosynthesis protein
scnpilot_p_inoc_scaffold_2700_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1610..2554)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFZ0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82351.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2700_curated_3
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2567..3418)
DNA (852bp) protein (284aa)
Family 2 glycosyl transferase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GNI5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEO93202.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2700_curated_4
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3545..4507
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NDV0_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH43989.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2700_curated_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4604..6424
DNA (1821bp) protein (607aa)
Putative multidrug export ATP-binding/permease protein {ECO:0000313|EMBL:AKH43988.1}; EC=3.6.3.- {ECO:0000313|EMBL:AKH43988.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G506_NOVAD
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial
scnpilot_p_inoc_scaffold_2700_curated_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6443..6973
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CB94_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43986.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_2700_curated_7
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7177..7764
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CB94_9SPHN
Cytochrome C {ECO:0000313|EMBL:AKH43987.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
scnpilot_p_inoc_scaffold_2700_curated_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7857..9158)
DNA (1302bp) protein (434aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2T8_9SPHN
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
scnpilot_p_inoc_scaffold_2700_curated_9
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9167..9739)
DNA (573bp) protein (191aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
ATP-dependent HslUV protease, peptidase subunit HslV (EC:3.4.25.-); K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
ATP-dependent protease subunit HslV n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H5G1_9SPHN
scnpilot_p_inoc_scaffold_2700_curated_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9797..10270)
DNA (474bp) protein (158aa)
SmpA/OmlA n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEM9_9SPHN
Outer membrane protein assembly factor BamE {ECO:0000313|EMBL:AKH43980.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SmpA/OmlA protein
scnpilot_p_inoc_scaffold_2700_curated_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10457..10969
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKI4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49070.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2700_curated_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10972..11499
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUL2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49069.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2700_curated_13
unknown

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comp(11534..11650)
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 13 items

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