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scnpilot_p_inoc_scaffold_1717_curated_19

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 11842..12633

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YQ38_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 56.3
  • Coverage: 247.0
  • Bit_score: 264
  • Evalue 1.60e-67
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.3
  • Coverage: 247.0
  • Bit_score: 264
  • Evalue 2.30e-67
FliA/WhiG subfamily RNA polymerase sigma-28 subunit; K02405 RNA polymerase sigma factor for flagellar operon FliA similarity KEGG
DB: KEGG
  • Identity: 33.9
  • Coverage: 251.0
  • Bit_score: 137
  • Evalue 5.50e-30

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Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 792
ATGAGGGCCCGCAGCGATTGCGGGGGCAAGAACAGCCGCGAGGCGAAAGGCAGCGGCAGGGCAGCACCCTTGCGCGGTATGGACATGCTGCTGCGGCCAGAACGGGTGGAGGCAGCCCTCTGGCGCAGCTTCAGCGAAGATTCCGGCCCTGCCGCCCGCCTCCGCCTGTTCGAGCATTATCGGCCTTTCGCTGCCCGTCTGGCCACGTCGCAATTCGCCCGCCGGGCGCCCGGCAATTACGAGCGCGGCGACGTGGAGCAACTGGCCTATGAGGCGTTGATACAGGCAATCAGCCGCTTCGACGCAACGCGCGGCGTGCCGTTTGAAGCCTTCGCCCGGCTCCGCATCAAAGGGCATATAGCCAATCATCTGGCACAGGCGAGCGAAGGGGCAGCGCAACGCCAATTTCGCCAACGGGTCGAGCGGGAGCGGTTGAAATCGCTTCAGGCCGGGAATGAGCCCCCCGATGCCCTTGCGGCCTTGTCGGCCTTGTCCGCGGCAATCGCCTTGGGGCTGATGCTGGAGGGGGATAGGACGCGGGAACTGCACGCCATCCCCGATCCGGCCCCTACCCCATATGAAAGCCTCGCCTGGCGCGATCTGCAGGGCCGGGTGCGTGCGCTGATAGACAAGCTGCCCGAGCGTGAGGAGTTCGTGATCCGCCAGCATTACCGCAACGGCGTCAGCTTCCAGCAGATCGCCGTGCTGATGGGCCTCACCAAGGGGCGGGTATCGCAAATACACAAGGCCGCTCTGGACAGGCTCCGGGGTATGGCCGCAAAGCTACGTTAG
PROTEIN sequence
Length: 264
MRARSDCGGKNSREAKGSGRAAPLRGMDMLLRPERVEAALWRSFSEDSGPAARLRLFEHYRPFAARLATSQFARRAPGNYERGDVEQLAYEALIQAISRFDATRGVPFEAFARLRIKGHIANHLAQASEGAAQRQFRQRVERERLKSLQAGNEPPDALAALSALSAAIALGLMLEGDRTRELHAIPDPAPTPYESLAWRDLQGRVRALIDKLPEREEFVIRQHYRNGVSFQQIAVLMGLTKGRVSQIHKAALDRLRGMAAKLR*