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scnpilot_p_inoc_scaffold_4823_curated_3

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(1910..2413)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A6T3_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 67.1
  • Coverage: 164.0
  • Bit_score: 212
  • Evalue 3.60e-52
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAD50453.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.1
  • Coverage: 164.0
  • Bit_score: 212
  • Evalue 5.00e-52
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 51.8
  • Coverage: 170.0
  • Bit_score: 163
  • Evalue 7.80e-38

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Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 504
GTGAACGCAAGCAGCCTGCAGGCAGTGGCAATCAATGAACGGGCCCGGCTGCTGCGCTTTCTTGTAGCGCGCGGTGCGGGAGAAGAAGCGGAAGACCTGTTTCAGGAATTATGGCAGCGCGCCGGGAAACCACCCGCCCAGCCGGTCGCCGATCCGCTTTCCTATCTGTTCCGCGCCGCCGACAATCTGATGTGCGACATGCGTCGGTCGCAGATCAGCCGCGCAAGGCGCCAGCACGACTGGCACGAGGCGGTGTTCGCACAGAATGAGGACAGCCTGAGCGAACGGGCGCTGATTGCCCGCCAAAGGCTGGAGGCGGTGGAAAGGGTTCTGGATGGGCTTGGGCCGCGCGTCAGCCAGGCGTTCCGCCGCTACAGGCTGGAAGAACAGAGCCAGGCCACAATTGCCCGGGATCTGGGGGTGAGCCTGAGTTCGGTCGAAAAGGATCTGCAGAAGGCCTATCGCGCTCTGGCCGATCTGAAACACCGTTTCGACAGCGAATAG
PROTEIN sequence
Length: 168
VNASSLQAVAINERARLLRFLVARGAGEEAEDLFQELWQRAGKPPAQPVADPLSYLFRAADNLMCDMRRSQISRARRQHDWHEAVFAQNEDSLSERALIARQRLEAVERVLDGLGPRVSQAFRRYRLEEQSQATIARDLGVSLSSVEKDLQKAYRALADLKHRFDSE*