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scnpilot_p_inoc_scaffold_4823_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4823_curated_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..882)
DNA (882bp) protein (294aa)
TonB-dependent siderophore receptor n=1 Tax=Novosphingobium sp. AP12 RepID=J2GGX1_9SPHN
Ferrichrome-iron receptor {ECO:0000313|EMBL:GAO55183.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
iron complex outermembrane receptor protein; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_4823_curated_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1070..1786)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037B81D8
TonB-like protein; K03832 periplasmic protein TonB
TonB-like protein {ECO:0000313|EMBL:BAK68129.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_p_inoc_scaffold_4823_curated_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1910..2413)
DNA (504bp) protein (168aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A6T3_9SPHN
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAD50453.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ECF subfamily RNA polymerase sigma-24 factor
scnpilot_p_inoc_scaffold_4823_curated_4
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2410..3084)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP90_9SPHN
putative metalloendopeptidase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_p_inoc_scaffold_4823_curated_5
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3224..4048
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K629_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32124.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4823_curated_6
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4054..4884
DNA (831bp) protein (277aa)
Putative inositol-1-monophosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNM8_9SPHN
putative inositol monophosphatase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_p_inoc_scaffold_4823_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4881..6764
DNA (1884bp) protein (628aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYJ5_9SPHN
Capsule biosynthesis protein {ECO:0000313|EMBL:AJP71268.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
capsule polysaccharide export system periplasmic protein KpsD
scnpilot_p_inoc_scaffold_4823_curated_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7786..8736
DNA (951bp) protein (317aa)
Putative glycosyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP86_9SPHN
Putative glycosyltransferase {ECO:0000313|EMBL:GAD50447.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
glycosyl transferase family protein
scnpilot_p_inoc_scaffold_4823_curated_9
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8733..10061
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YAK7_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_p_inoc_scaffold_4823_curated_10
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10058..11065
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0ITG1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32120.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
dtdpglucose 4,6-dehydratase
Displaying 10 items

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